Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V6984_RS08125 Genome accession   NZ_CP146256
Coordinates   1719737..1721113 (+) Length   458 a.a.
NCBI ID   WP_342759278.1    Uniprot ID   -
Organism   Kineothrix sp. IPX-CK     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1714737..1726113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6984_RS08105 (V6984_08105) - 1714767..1716143 (+) 1377 WP_342759275.1 SH3 domain-containing protein -
  V6984_RS08110 (V6984_08110) - 1716299..1716676 (+) 378 WP_342759968.1 GntR family transcriptional regulator -
  V6984_RS08115 (V6984_08115) - 1716676..1719129 (+) 2454 WP_342759276.1 ATP-dependent Clp protease ATP-binding subunit -
  V6984_RS08120 (V6984_08120) - 1719242..1719652 (+) 411 WP_342759277.1 endosialidase -
  V6984_RS08125 (V6984_08125) radA 1719737..1721113 (+) 1377 WP_342759278.1 DNA repair protein RadA Machinery gene
  V6984_RS08130 (V6984_08130) - 1721155..1722900 (+) 1746 WP_342759279.1 ABC transporter ATP-binding protein -
  V6984_RS08135 (V6984_08135) - 1722897..1724648 (+) 1752 WP_342759280.1 ABC transporter ATP-binding protein -
  V6984_RS08140 (V6984_08140) - 1724669..1725564 (+) 896 Protein_1581 EamA family transporter -
  V6984_RS08145 (V6984_08145) lspA 1725571..1726104 (-) 534 WP_342759281.1 signal peptidase II -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49528.26 Da        Isoelectric Point: 6.6879

>NTDB_id=942396 V6984_RS08125 WP_342759278.1 1719737..1721113(+) (radA) [Kineothrix sp. IPX-CK]
MAKSKNGTVFFCQECGYESSKWMGQCPGCKAWNTFVEERVTISTKGSGSFSKAGSSVKRAEPARLSEVSLGGEERIGTRI
EELDRVLGGGIVPGSLTLVGGDPGIGKSTLLLQVCQKLAGAGRKVLYLSGEESLRQIKIRANRIGEFNDNLLLLCETNLY
VIEETLKAMKPDVAVIDSIQTMYSEDVSSAPGSVSQVREATNIFLQLAKGMNISIFLVGHVTKEGTVAGPRVLEHMVDTV
LYFEGDRHASYRILRGVKNRFGSTNEIGVFEMREEGLIEVMNPSEFMLNGRPEDASGSVVACSMEGTRPILIEIQALVCG
SNFGIPRRQAIGTDFNRVNLLMAVLEKRVGLQMSGCDAYVNLAGGIKIVEPAIDLGIVLAIVSSFRNRAIDSKVIAFGEV
GLSGEVRAVSMARQRVQEAKKLGFTTCILPAVCMEGLSEEKDMKVIGVRSVRDAIDLI

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=942396 V6984_RS08125 WP_342759278.1 1719737..1721113(+) (radA) [Kineothrix sp. IPX-CK]
ATGGCAAAGAGTAAGAACGGGACAGTATTTTTTTGTCAGGAATGTGGTTATGAATCGTCGAAATGGATGGGACAGTGTCC
TGGATGCAAGGCTTGGAATACTTTTGTGGAAGAACGGGTAACTATAAGTACGAAGGGAAGCGGGAGTTTCTCGAAAGCGG
GAAGCAGTGTGAAACGGGCGGAGCCAGCCAGGCTGTCGGAGGTGTCCTTAGGCGGTGAGGAGAGAATCGGCACACGGATA
GAAGAACTGGATAGGGTACTTGGAGGCGGCATTGTGCCGGGCTCCCTCACTCTGGTAGGAGGAGATCCGGGAATCGGTAA
GTCCACTCTCTTGCTTCAGGTATGCCAGAAGTTGGCCGGAGCCGGCAGAAAGGTATTGTATCTGTCCGGAGAGGAATCAT
TGCGCCAGATTAAGATACGGGCCAACAGAATCGGAGAATTCAACGACAACCTTCTGCTCCTGTGCGAGACGAATCTATAC
GTTATCGAGGAGACCTTAAAGGCAATGAAGCCCGATGTGGCGGTCATTGATTCCATTCAGACCATGTACAGCGAGGATGT
ATCGTCGGCGCCGGGAAGCGTGTCTCAGGTAAGGGAGGCAACAAATATTTTTCTTCAATTGGCGAAAGGGATGAATATAT
CTATATTTCTTGTAGGACATGTGACCAAGGAGGGAACGGTGGCAGGCCCCAGAGTGTTAGAGCATATGGTAGATACGGTG
CTCTATTTCGAAGGGGACAGGCATGCTTCCTACCGGATACTTCGCGGGGTGAAGAACCGGTTCGGCTCCACCAATGAAAT
CGGAGTGTTTGAAATGAGGGAAGAAGGACTGATAGAGGTCATGAACCCATCAGAATTCATGTTAAACGGCAGGCCTGAGG
ACGCCAGCGGCTCGGTGGTGGCATGCTCTATGGAAGGGACCAGACCGATACTGATAGAGATACAGGCTTTGGTATGCGGG
AGCAATTTCGGTATTCCGAGGCGTCAGGCGATTGGCACGGATTTCAACCGGGTGAATCTGTTGATGGCGGTGCTGGAAAA
GCGGGTTGGTCTGCAAATGTCAGGCTGCGACGCTTATGTGAATCTGGCAGGAGGAATCAAGATCGTAGAACCGGCTATTG
ATTTGGGAATCGTGCTGGCCATCGTTTCCAGCTTTAGGAACCGGGCCATCGATAGCAAGGTAATTGCTTTTGGTGAAGTT
GGACTAAGCGGAGAGGTAAGGGCTGTGAGCATGGCGAGGCAGCGGGTTCAGGAGGCTAAGAAGCTGGGATTTACCACTTG
TATTCTGCCTGCGGTCTGTATGGAGGGTTTAAGCGAAGAAAAGGATATGAAGGTGATCGGTGTAAGGAGTGTACGAGACG
CTATCGACCTCATATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-37)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)

AAA domain (AAA_25)

(61-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.579

99.563

0.563
  radA Streptococcus mitis NCTC 12261

51.868

99.345

0.515
  radA Streptococcus pneumoniae Rx1

51.868

99.345

0.515
  radA Streptococcus pneumoniae D39

51.868

99.345

0.515
  radA Streptococcus pneumoniae R6

51.868

99.345

0.515
  radA Streptococcus pneumoniae TIGR4

51.868

99.345

0.515
  radA Streptococcus mitis SK321

51.648

99.345

0.513