Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V6V88_RS16710 Genome accession   NZ_CP146253
Coordinates   3633996..3635357 (-) Length   453 a.a.
NCBI ID   WP_056324216.1    Uniprot ID   -
Organism   Achromobacter sp. E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3628996..3640357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6V88_RS16685 (V6V88_16685) - 3629409..3630410 (+) 1002 WP_062840791.1 tripartite tricarboxylate transporter substrate binding protein -
  V6V88_RS16690 (V6V88_16690) - 3630486..3631457 (+) 972 WP_056324225.1 tripartite tricarboxylate transporter substrate binding protein -
  V6V88_RS16695 (V6V88_16695) - 3631588..3632544 (+) 957 WP_338615670.1 2-hydroxyacid dehydrogenase -
  V6V88_RS16700 (V6V88_16700) - 3632706..3632924 (-) 219 WP_056324221.1 hypothetical protein -
  V6V88_RS16705 (V6V88_16705) - 3633188..3633967 (-) 780 WP_338615671.1 sulfite exporter TauE/SafE family protein -
  V6V88_RS16710 (V6V88_16710) radA 3633996..3635357 (-) 1362 WP_056324216.1 DNA repair protein RadA Machinery gene
  V6V88_RS16715 (V6V88_16715) - 3635776..3636462 (+) 687 WP_338615672.1 hypothetical protein -
  V6V88_RS16720 (V6V88_16720) hpaR 3636570..3637031 (+) 462 WP_056324211.1 homoprotocatechuate degradation operon regulator HpaR -
  V6V88_RS16725 (V6V88_16725) hpaI 3637069..3637869 (+) 801 WP_338615673.1 4-hydroxy-2-oxoheptanedioate aldolase -
  V6V88_RS16730 (V6V88_16730) - 3637941..3639101 (-) 1161 Protein_3300 PepSY-associated TM helix domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48161.22 Da        Isoelectric Point: 6.9552

>NTDB_id=942363 V6V88_RS16710 WP_056324216.1 3633996..3635357(-) (radA) [Achromobacter sp. E1]
MAKTRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSAPAAAAHRYAPLASSSPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSETTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALEKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=942363 V6V88_RS16710 WP_056324216.1 3633996..3635357(-) (radA) [Achromobacter sp. E1]
ATGGCAAAAACCCGTACCGTCTATGTGTGCGCCGACTGTGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACGCTTGAAGAAACGGTGGAGTCGTCCGCGCCTGCGGCCGCGGCGCACCGCTATGCGCCGCTGGCCT
CGTCCAGCCCGGTGCGCAGCCTGTCCGAAATCGAGGCCCGCGAAACGCCGCGCCAGCCCACCGGCCTGGACGAATTTGAT
CGCGTGCTCGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCT
CTTGCAGGCGCTGGCCTCGCTGTCCGAAACCACCAACGTGCTGTACGTGACGGGCGAAGAGTCCGCCGAACAGGTCGCGT
TGCGCGCGCGCCGGCTGGGACTGCAAACCGGCAACGTCAACCTGCTGGCCGAAATCCGCCTCGAAGCCATCCAGGCCGCG
GTGTCGGAACAAAAGCCCACCGTCGCCGTCATCGATTCCATCCAGACGCTCTACAGCGGCGAACTCACAGCGGCGCCGGG
ATCGGTGTCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGGCTGGCCAAGCAGACGGGCATCGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAACACATCGTGGATACCGTGCTTTATTTCGAGGGC
GACACGCATTCGTCGTTCCGCCTGGTGCGCGCATTCAAGAACCGCTTCGGCGCCGTCAACGAGCTTGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCTTCCGCACTGTTCCTGTCGCAGCACGAACAGCAGGTCGCCGGTTCGT
GCGTCATGGCCACGCAGGAAGGCACGCGTCCGCTCCTCGTCGAGATCCAGGCGCTGGTCGATAGTTCCCACGCGCCCAAT
CCGCGCCGGCTGACGGTCGGCCTGGAAGGCAACCGTCTGGCCATGCTGCTGGCCGTGCTGCACCGGCACGCGGGCGTGTC
GACCTTCGACCAGGACGTCTTCGTCAATGCGGTTGGCGGCGTGCGCATCACCGAACCCGCGGCCGACCTGCCGGTGCTGC
TGGCCATCATGTCGTCGCTGCGCGATCGGCCGCTGCCGCGCGGGTTGATCGCATTCGGCGAAGTGGGCCTGGCCGGCGAG
ATCCGGCCCGCCCCGCGCGGCCAGGAACGTCTGCGCGAAGCCGCCAAGCTGGGTTTCTCGGTGGCGCTCATCCCCAAGGC
CAACGCGCCGCGCCAGCCCATCGAGGGCCTGGAGATCTGGGCGGTCGATCGCCTGGACGCGGCATTGGAAAAGCTGCGTT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.219

100

0.506
  radA Streptococcus mitis SK321

46.476

100

0.466
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461
  radA Streptococcus pneumoniae TIGR4

48.357

94.04

0.455
  radA Streptococcus pneumoniae R6

48.357

94.04

0.455
  radA Streptococcus pneumoniae Rx1

48.357

94.04

0.455
  radA Streptococcus pneumoniae D39

48.357

94.04

0.455