Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V6B14_RS19775 Genome accession   NZ_CP146246
Coordinates   4171968..4172918 (-) Length   316 a.a.
NCBI ID   WP_067205131.1    Uniprot ID   A0A7G8X7L4
Organism   Sporosarcina psychrophila strain TMP10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4166968..4177918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6B14_RS19760 (V6B14_19780) - 4169206..4170180 (-) 975 WP_338653797.1 siderophore ABC transporter substrate-binding protein -
  V6B14_RS19765 (V6B14_19785) - 4170267..4171028 (-) 762 WP_067205137.1 ATP-binding cassette domain-containing protein -
  V6B14_RS19770 (V6B14_19790) - 4171025..4171975 (-) 951 WP_067205134.1 iron chelate uptake ABC transporter family permease subunit -
  V6B14_RS19775 (V6B14_19795) ceuB 4171968..4172918 (-) 951 WP_067205131.1 ABC transporter permease Machinery gene
  V6B14_RS19780 (V6B14_19800) - 4173266..4174144 (-) 879 WP_187046527.1 DUF6612 family protein -
  V6B14_RS19785 (V6B14_19805) - 4174367..4176085 (+) 1719 WP_338653801.1 ABC transporter ATP-binding protein -
  V6B14_RS19790 (V6B14_19810) hflX 4176475..4177746 (-) 1272 WP_338653802.1 GTPase HflX -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34781.15 Da        Isoelectric Point: 10.2380

>NTDB_id=942324 V6B14_RS19775 WP_067205131.1 4171968..4172918(-) (ceuB) [Sporosarcina psychrophila strain TMP10]
MKIRYLVIALISLSFLSLFVGVSHITPMGLLDFKSEATEIFLISRVPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFTNASTIEKMIVAFVFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSIATFFAYKANVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYRRIVNIGLILVALITTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLVCDILGRVLIYPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=942324 V6B14_RS19775 WP_067205131.1 4171968..4172918(-) (ceuB) [Sporosarcina psychrophila strain TMP10]
ATGAAGATACGTTACTTAGTCATCGCACTTATCAGTCTTTCATTCCTATCGTTATTTGTTGGAGTGAGCCATATTACGCC
AATGGGTCTGCTTGATTTTAAATCGGAAGCAACCGAAATTTTTCTAATCAGCCGCGTGCCGCGACTTGTCGCTATTCTTC
TTGCAGGAGCAGGGATGAGTATAGCAGGTCTCATTATGCAACAGCTGAGCCGAAATAAATTCGTTTCACCGACAACAGCA
GGAACTTTGGATGCGACACGGCTCGGGATTCTTGTTTCGATGCTGTTATTCACAAACGCATCCACAATTGAAAAGATGAT
TGTCGCATTTGTATTCGCGCTTGCCGGCACGCTACTGTTTATGCAAATCCTTGACCGTATCAAATTCAAGGATGCGATTT
TCATTCCGTTAGTTGGGCTTATGTTCGGTAATATTTTGTCATCTATTGCGACGTTTTTCGCTTACAAAGCGAACGTCATT
CAAAATATGTCGGCATGGTTACAAGGTGATTTTTCGATGATTATGAAAGGACGTTATGAACTTCTATACATAAGCATTCC
CGTGCTAATCATCACATATTTGTACGCAAACCGGTTTACTGTTGCGGGAATGGGTGAAGATTTCTCGAAAAACCTCGGGC
TTGCTTATAGGCGGATCGTCAATATCGGACTAATCCTTGTTGCGCTTATTACCACTACCGTCGTCTTGACGGTCGGAATG
ATTCCCTTCCTTGGATTGATCATTCCGAATATCGTTTCTATTTTTAAAGGAGATCATTTACAGAAGACATTGCCTCATAC
AGCACTGCTAGGCGCGATATTCCTGCTTGTCTGTGACATTTTAGGTAGAGTGCTTATCTATCCGTATGAGATTTCAATTA
GTTTGATGGTAGGCGTTATTGGCAGTGGAATATTCCTCTATTTATTGTTTAGGAGGAAGGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8X7L4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525