Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   U2B25_RS06700 Genome accession   NZ_CP169947
Coordinates   1365489..1366640 (+) Length   383 a.a.
NCBI ID   WP_000020347.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN57-2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1360489..1371640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2B25_RS06675 (U2B25_06675) yfmH 1361320..1362606 (+) 1287 WP_000664775.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  U2B25_RS06680 (U2B25_06680) ymfI 1362606..1363310 (+) 705 WP_000646228.1 elongation factor P 5-aminopentanone reductase -
  U2B25_RS06685 (U2B25_06685) - 1363415..1364242 (+) 828 WP_000214890.1 YmfK family protein -
  U2B25_RS06690 (U2B25_06690) - 1364261..1364653 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  U2B25_RS06695 (U2B25_06695) pgsA 1364687..1365265 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  U2B25_RS06700 (U2B25_06700) cinA 1365489..1366640 (+) 1152 WP_000020347.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  U2B25_RS06705 (U2B25_06705) recA 1366805..1367848 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  U2B25_RS06710 (U2B25_06710) rny 1368202..1369761 (+) 1560 WP_064265380.1 ribonuclease Y -
  U2B25_RS06715 (U2B25_06715) - 1370058..1370273 (-) 216 WP_000026308.1 hypothetical protein -
  U2B25_RS06720 (U2B25_06720) - 1370447..1371244 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43265.58 Da        Isoelectric Point: 6.1914

>NTDB_id=942293 U2B25_RS06700 WP_000020347.1 1365489..1366640(+) (cinA) [Staphylococcus aureus strain BSN57-2]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYVLIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=942293 U2B25_RS06700 WP_000020347.1 1365489..1366640(+) (cinA) [Staphylococcus aureus strain BSN57-2]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGTGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433