Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   VP398_RS16700 Genome accession   NZ_CP146231
Coordinates   3489733..3490113 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain G20AB08     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3484733..3495113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP398_RS16670 (VP398_16670) tadA 3484851..3485354 (-) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -
  VP398_RS16675 (VP398_16675) - 3485361..3486485 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  VP398_RS16680 (VP398_16680) ung 3486482..3487195 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  VP398_RS16685 (VP398_16685) - 3487246..3487842 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  VP398_RS16690 (VP398_16690) gspK 3488073..3489032 (-) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  VP398_RS16695 (VP398_16695) xcpW 3489032..3489733 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  VP398_RS16700 (VP398_16700) xcpV 3489733..3490113 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  VP398_RS16705 (VP398_16705) - 3490103..3490657 (-) 555 WP_000841373.1 type II secretion system protein -
  VP398_RS16710 (VP398_16710) - 3490667..3491275 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  VP398_RS16715 (VP398_16715) - 3491312..3492085 (-) 774 WP_000497298.1 TatD family hydrolase -
  VP398_RS16720 (VP398_16720) - 3492103..3492444 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  VP398_RS16725 (VP398_16725) - 3492456..3493436 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  VP398_RS16730 (VP398_16730) kdsB 3493448..3494209 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=942274 VP398_RS16700 WP_000836911.1 3489733..3490113(-) (xcpV) [Acinetobacter baumannii strain G20AB08]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=942274 VP398_RS16700 WP_000836911.1 3489733..3490113(-) (xcpV) [Acinetobacter baumannii strain G20AB08]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1