Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8631_RS03350 Genome accession   NZ_AP028387
Coordinates   624627..625010 (+) Length   127 a.a.
NCBI ID   WP_002854812.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11353     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 619627..630010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8631_RS03330 (B11353_06620) - 619706..621640 (-) 1935 WP_107701835.1 RNB domain-containing ribonuclease -
  R8631_RS03335 (B11353_06630) ilvC 621759..622781 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  R8631_RS03340 (B11353_06640) - 622785..623867 (+) 1083 WP_002854844.1 divergent polysaccharide deacetylase family protein -
  R8631_RS03345 (B11353_06650) dprA 623857..624630 (+) 774 WP_002855109.1 DNA-processing protein DprA Machinery gene
  R8631_RS03350 (B11353_06660) dprB 624627..625010 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX Machinery gene
  R8631_RS03355 (B11353_06670) - 625039..625878 (+) 840 WP_079263865.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8631_RS03360 (B11353_06680) msrA 626054..626551 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8631_RS03365 (B11353_06690) ppa 626592..627110 (-) 519 WP_002871349.1 inorganic diphosphatase -
  R8631_RS03370 (B11353_06700) adk 627120..627698 (-) 579 WP_002872374.1 adenylate kinase -
  R8631_RS03375 (B11353_06710) aspS 627695..629446 (-) 1752 WP_052801818.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14159.67 Da        Isoelectric Point: 8.4950

>NTDB_id=94226 R8631_RS03350 WP_002854812.1 624627..625010(+) (dprB) [Campylobacter jejuni strain BCH-11353]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIADTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=94226 R8631_RS03350 WP_002854812.1 624627..625010(+) (dprB) [Campylobacter jejuni strain BCH-11353]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCGATACGCGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441

Multiple sequence alignment