Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VP398_RS04860 Genome accession   NZ_CP146231
Coordinates   1022607..1023242 (+) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii strain G20AB08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1017607..1028242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP398_RS04845 (VP398_04845) adeT2 1018667..1019653 (-) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -
  VP398_RS04850 (VP398_04850) - 1019733..1020548 (-) 816 WP_000547774.1 NAD(P)H-binding protein -
  VP398_RS04855 (VP398_04855) recG 1020569..1022614 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  VP398_RS04860 (VP398_04860) comF 1022607..1023242 (+) 636 WP_000472273.1 phosphoribosyltransferase family protein Machinery gene
  VP398_RS04865 (VP398_04865) - 1023245..1023646 (-) 402 WP_000849701.1 NUDIX domain-containing protein -
  VP398_RS04870 (VP398_04870) - 1023661..1024242 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  VP398_RS04875 (VP398_04875) - 1024400..1025413 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  VP398_RS04880 (VP398_04880) - 1025483..1025770 (-) 288 WP_000250997.1 STAS domain-containing protein -
  VP398_RS04885 (VP398_04885) - 1025782..1026423 (-) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  VP398_RS04890 (VP398_04890) - 1026450..1027130 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  VP398_RS04895 (VP398_04895) mlaE 1027130..1027906 (-) 777 WP_001091950.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=942235 VP398_RS04860 WP_000472273.1 1022607..1023242(+) (comF) [Acinetobacter baumannii strain G20AB08]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=942235 VP398_RS04860 WP_000472273.1 1022607..1023242(+) (comF) [Acinetobacter baumannii strain G20AB08]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTTGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991