Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   VP398_RS04515 Genome accession   NZ_CP146231
Coordinates   964464..965348 (-) Length   294 a.a.
NCBI ID   WP_000914776.1    Uniprot ID   A0A9P3CWB8
Organism   Acinetobacter baumannii strain G20AB08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 959464..970348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP398_RS04500 (VP398_04500) miaB 961311..962762 (+) 1452 WP_000218140.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  VP398_RS04505 (VP398_04505) - 962800..963888 (+) 1089 WP_000122983.1 PhoH family protein -
  VP398_RS04510 (VP398_04510) ybeY 963898..964374 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  VP398_RS04515 (VP398_04515) tonB2 964464..965348 (-) 885 WP_000914776.1 energy transducer TonB Machinery gene
  VP398_RS04520 (VP398_04520) - 965579..966250 (+) 672 WP_001193958.1 hypothetical protein -
  VP398_RS04525 (VP398_04525) - 966408..967121 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  VP398_RS04530 (VP398_04530) - 967194..967769 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  VP398_RS04535 (VP398_04535) wrbA 967822..968415 (-) 594 WP_001183357.1 NAD(P)H:quinone oxidoreductase -
  VP398_RS04540 (VP398_04540) - 968703..969950 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33650.54 Da        Isoelectric Point: 9.0935

>NTDB_id=942233 VP398_RS04515 WP_000914776.1 964464..965348(-) (tonB2) [Acinetobacter baumannii strain G20AB08]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=942233 VP398_RS04515 WP_000914776.1 964464..965348(-) (tonB2) [Acinetobacter baumannii strain G20AB08]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997