Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACEZ45_RS10260 Genome accession   NZ_CP169877
Coordinates   2126436..2127572 (+) Length   378 a.a.
NCBI ID   WP_043867220.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JF     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2121436..2132572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZ45_RS10225 (ACEZ45_10225) - 2121471..2121899 (+) 429 WP_024085498.1 hypothetical protein -
  ACEZ45_RS10230 (ACEZ45_10230) - 2121974..2122495 (+) 522 WP_024085499.1 hypothetical protein -
  ACEZ45_RS10235 (ACEZ45_10235) - 2122740..2123049 (+) 310 Protein_1964 ATP-dependent DNA ligase -
  ACEZ45_RS10240 (ACEZ45_10240) - 2123322..2123786 (+) 465 WP_025852481.1 hypothetical protein -
  ACEZ45_RS10245 (ACEZ45_10245) - 2124298..2124426 (-) 129 WP_256078009.1 hypothetical protein -
  ACEZ45_RS10250 (ACEZ45_10250) - 2124999..2125373 (+) 375 WP_024085504.1 YoqO family protein -
  ACEZ45_RS10255 (ACEZ45_10255) - 2125620..2126072 (-) 453 WP_025852486.1 hypothetical protein -
  ACEZ45_RS10260 (ACEZ45_10260) rapC 2126436..2127572 (+) 1137 WP_043867220.1 Rap family tetratricopeptide repeat protein Regulator
  ACEZ45_RS10265 (ACEZ45_10265) - 2127562..2127744 (+) 183 WP_003153655.1 hypothetical protein -
  ACEZ45_RS10270 (ACEZ45_10270) - 2128070..2129089 (+) 1020 WP_043867221.1 hypothetical protein -
  ACEZ45_RS10275 (ACEZ45_10275) - 2129150..2129509 (-) 360 WP_014305240.1 hypothetical protein -
  ACEZ45_RS10280 (ACEZ45_10280) - 2129515..2129982 (-) 468 WP_024085506.1 DUF4879 domain-containing protein -
  ACEZ45_RS10285 (ACEZ45_10285) - 2130541..2130879 (-) 339 WP_014305242.1 hypothetical protein -
  ACEZ45_RS10290 (ACEZ45_10290) - 2131093..2131275 (-) 183 WP_223203798.1 N-acetyltransferase -
  ACEZ45_RS10295 (ACEZ45_10295) - 2131285..2131545 (-) 261 WP_223151887.1 GNAT family N-acetyltransferase -
  ACEZ45_RS10300 (ACEZ45_10300) - 2131641..2132237 (-) 597 WP_014305245.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44570.09 Da        Isoelectric Point: 4.7973

>NTDB_id=942103 ACEZ45_RS10260 WP_043867220.1 2126436..2127572(+) (rapC) [Bacillus amyloliquefaciens strain JF]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKGEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEEQPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVDGKQVCEQGLMLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=942103 ACEZ45_RS10260 WP_043867220.1 2126436..2127572(+) (rapC) [Bacillus amyloliquefaciens strain JF]
TTGGAGCAATTGATCTCTTCTTCAAAGGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTATTCAGTGTTGC
AGATGCAGAAATTCTAAAGGGTGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACAACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTACAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATTGTTCAAGCAATAGAAACCTACAAAGCACACGAGACATACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAACGCATTAAAACAAGCACAAGAAATTG
ATATGCCGCGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTATTCAACACGGTCGATGGAAAACAGGTTTGTGAACAAGGTCTTATGCTTTCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGATAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCGGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(191-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

46.561

100

0.466
  rapF Bacillus subtilis subsp. subtilis str. 168

45.932

100

0.463