Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   ABUS19_RS16055 Genome accession   NZ_CP169872
Coordinates   3401014..3401529 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain Up377     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3396014..3406529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS19_RS16035 - 3396333..3397793 (+) 1461 WP_000004971.1 amino acid permease -
  ABUS19_RS16040 - 3398070..3399275 (+) 1206 WP_000512701.1 RtcB family protein -
  ABUS19_RS16045 - 3399294..3399437 (+) 144 WP_162138624.1 hypothetical protein -
  ABUS19_RS16050 omp38 3399562..3400632 (-) 1071 WP_000777880.1 outer membrane protein Omp38 -
  ABUS19_RS16055 fimT 3401014..3401529 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  ABUS19_RS16060 - 3401638..3402813 (+) 1176 WP_000129964.1 thiolase family protein -
  ABUS19_RS16065 - 3402940..3403383 (+) 444 WP_001176580.1 VOC family protein -
  ABUS19_RS16070 - 3403426..3403779 (-) 354 WP_000457786.1 multidrug efflux SMR transporter -
  ABUS19_RS16075 - 3403861..3404346 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  ABUS19_RS16080 - 3404339..3405982 (-) 1644 WP_000281764.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=942001 ABUS19_RS16055 WP_000477151.1 3401014..3401529(+) (fimT) [Acinetobacter baumannii strain Up377]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=942001 ABUS19_RS16055 WP_000477151.1 3401014..3401529(+) (fimT) [Acinetobacter baumannii strain Up377]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGACATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427