Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABUS19_RS08195 Genome accession   NZ_CP169872
Coordinates   1728928..1729563 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain Up377     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1723928..1734563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS19_RS08170 - 1724768..1725781 (+) 1014 WP_001096098.1 aminoglycoside phosphotransferase family protein -
  ABUS19_RS08175 murU 1725781..1726470 (+) 690 WP_000646455.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABUS19_RS08180 rsmG 1726558..1727190 (+) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABUS19_RS08185 - 1727212..1727994 (+) 783 WP_000057212.1 ParA family protein -
  ABUS19_RS08190 - 1727991..1728878 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  ABUS19_RS08195 exbB 1728928..1729563 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABUS19_RS08200 - 1729579..1730007 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  ABUS19_RS08205 msbA 1730004..1731731 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  ABUS19_RS08210 lpxK 1731734..1732744 (+) 1011 WP_000050454.1 tetraacyldisaccharide 4'-kinase -
  ABUS19_RS08215 kdsB 1732754..1733515 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABUS19_RS08220 - 1733527..1734507 (+) 981 WP_004747384.1 DNA polymerase III, delta' subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=941978 ABUS19_RS08195 WP_000264037.1 1728928..1729563(+) (exbB) [Acinetobacter baumannii strain Up377]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=941978 ABUS19_RS08195 WP_000264037.1 1728928..1729563(+) (exbB) [Acinetobacter baumannii strain Up377]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393