Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | R8665_RS06025 | Genome accession | NZ_AP028386 |
| Coordinates | 1148109..1149068 (+) | Length | 319 a.a. |
| NCBI ID | WP_317676760.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain BCH-11348 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1143109..1154068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8665_RS05995 (B11348_11710) | neuC | 1143700..1144824 (+) | 1125 | WP_002869019.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| R8665_RS06000 (B11348_11720) | - | 1144817..1145434 (+) | 618 | WP_019260375.1 | glycosyltransferase | - |
| R8665_RS06005 (B11348_11730) | - | 1145431..1145763 (+) | 333 | WP_019260376.1 | hypothetical protein | - |
| R8665_RS06010 (B11348_11740) | - | 1145760..1146425 (+) | 666 | WP_317676758.1 | cytidylyltransferase domain-containing protein | - |
| R8665_RS06015 (B11348_11750) | - | 1146413..1147246 (+) | 834 | WP_052802044.1 | CatB-related O-acetyltransferase | - |
| R8665_RS06020 (B11348_11760) | waaV | 1147238..1148050 (-) | 813 | WP_317676759.1 | glycosyltransferase family 2 protein | - |
| R8665_RS06025 (B11348_11770) | waaF | 1148109..1149068 (+) | 960 | WP_317676760.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| R8665_RS06030 (B11348_11780) | gmhA | 1149049..1149609 (-) | 561 | WP_317676761.1 | D-sedoheptulose 7-phosphate isomerase | - |
| R8665_RS06035 (B11348_11790) | rfaE1 | 1149606..1150991 (-) | 1386 | WP_317676763.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| R8665_RS06040 (B11348_11800) | rfaD | 1150984..1151937 (-) | 954 | WP_317676764.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| R8665_RS06045 (B11348_11810) | gmhB | 1151938..1152498 (-) | 561 | WP_002878815.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| R8665_RS06050 (B11348_11820) | - | 1152580..1152882 (+) | 303 | WP_002852762.1 | c-type cytochrome | - |
| R8665_RS06055 (B11348_11830) | ccoS | 1152905..1153111 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36750.27 Da Isoelectric Point: 10.3205
>NTDB_id=94191 R8665_RS06025 WP_317676760.1 1148109..1149068(+) (waaF) [Campylobacter jejuni strain BCH-11348]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKTHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLTCMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKTHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLTCMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL
Nucleotide
Download Length: 960 bp
>NTDB_id=94191 R8665_RS06025 WP_317676760.1 1148109..1149068(+) (waaF) [Campylobacter jejuni strain BCH-11348]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAACTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAACGACAGT
GGTCCTATGCACATAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGCATTTAGATCTAACTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAACTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAACGACAGT
GGTCCTATGCACATAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGCATTTAGATCTAACTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.671 |
100 |
0.947 |