Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8665_RS05650 Genome accession   NZ_AP028386
Coordinates   1074512..1075060 (+) Length   182 a.a.
NCBI ID   WP_044306076.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11348     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1069512..1080060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8665_RS05625 (B11348_10960) rseP 1069684..1070790 (+) 1107 WP_044306072.1 RIP metalloprotease RseP -
  R8665_RS05630 (B11348_10970) - 1070783..1071643 (+) 861 WP_144666752.1 VirK family antimicrobial peptide resistance protein -
  R8665_RS05635 (B11348_10980) - 1071636..1072637 (-) 1002 WP_044306074.1 sugar phosphate isomerase/epimerase family protein -
  R8665_RS05640 (B11348_10990) - 1072634..1073908 (-) 1275 WP_070305501.1 MFS transporter -
  R8665_RS05645 (B11348_11000) rpsF 1074126..1074503 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8665_RS05650 (B11348_11010) ssb 1074512..1075060 (+) 549 WP_044306076.1 single-stranded DNA-binding protein Machinery gene
  R8665_RS05655 (B11348_11020) rpsR 1075071..1075331 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8665_RS05660 (B11348_11030) lon 1075392..1077767 (-) 2376 WP_002866098.1 endopeptidase La -
  R8665_RS05665 (B11348_11040) bamD 1077784..1078431 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  R8665_RS05670 (B11348_11050) fliW 1078592..1078981 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8665_RS05675 (B11348_11060) proC 1078981..1079712 (+) 732 WP_002932769.1 pyrroline-5-carboxylate reductase Machinery gene
  R8665_RS05680 (B11348_11070) ctsT 1079709..1080011 (+) 303 WP_317676740.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20595.51 Da        Isoelectric Point: 5.0431

>NTDB_id=94186 R8665_RS05650 WP_044306076.1 1074512..1075060(+) (ssb) [Campylobacter jejuni strain BCH-11348]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSSTPQQGGIGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=94186 R8665_RS05650 WP_044306076.1 1074512..1075060(+) (ssb) [Campylobacter jejuni strain BCH-11348]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGTT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAGTGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGAAATTC
CAGCACTCCACAACAAGGTGGAATTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.378

100

0.39

Multiple sequence alignment