Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V6L81_RS09805 Genome accession   NZ_CP146077
Coordinates   2104293..2104928 (+) Length   211 a.a.
NCBI ID   WP_338660684.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain ML3-2023-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099293..2109928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6L81_RS09785 (V6L81_09785) - 2099625..2100557 (+) 933 WP_095003141.1 ABC transporter ATP-binding protein -
  V6L81_RS09790 (V6L81_09790) - 2100554..2101333 (+) 780 WP_095003142.1 ABC transporter permease -
  V6L81_RS09795 (V6L81_09795) - 2101379..2101894 (-) 516 WP_095003143.1 DUF2062 domain-containing protein -
  V6L81_RS09800 (V6L81_09800) comA 2102028..2104244 (+) 2217 WP_178084406.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6L81_RS09805 (V6L81_09805) exbB 2104293..2104928 (+) 636 WP_338660684.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6L81_RS09810 (V6L81_09810) - 2104925..2105353 (+) 429 WP_095003145.1 biopolymer transporter ExbD -
  V6L81_RS09815 (V6L81_09815) lpxK 2105353..2106363 (+) 1011 WP_338660640.1 tetraacyldisaccharide 4'-kinase -
  V6L81_RS09820 (V6L81_09820) - 2106385..2106570 (+) 186 WP_086796064.1 Trm112 family protein -
  V6L81_RS09825 (V6L81_09825) kdsB 2106567..2107331 (+) 765 WP_095019638.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6L81_RS09830 (V6L81_09830) murB 2107328..2108347 (+) 1020 WP_095003148.1 UDP-N-acetylmuramate dehydrogenase -
  V6L81_RS09835 (V6L81_09835) - 2108363..2108974 (+) 612 WP_338660641.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23006.22 Da        Isoelectric Point: 6.8765

>NTDB_id=941605 V6L81_RS09805 WP_338660684.1 2104293..2104928(+) (exbB) [Pseudomonas bubulae strain ML3-2023-1]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNTLGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDDLVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=941605 V6L81_RS09805 WP_338660684.1 2104293..2104928(+) (exbB) [Pseudomonas bubulae strain ML3-2023-1]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGTCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATCTGCTCGGTCAGGTCTGGGTCTGGATCAAAGACA
AGCAAATGGACAAGGAAAAACTCAAGCAATTGCGTGCCGATTCGCCTCTGGGTGAGATTCTTGCCGCGGGCCTGGCCAAC
TCCCGTCATGGTCGCGAAATCATGAAAGAGTGCATTGAAGAGGCCGCCGCGCGCGTTATTCATGAGCTTGAGCGCTACCT
CAATACCCTGGGCACCATTGCCGCAATGGCGCCCTTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGAATGACCTCCAATGCTGCGGTGCTGGCGGGTGGTATTTCCAAGGCGCTGATCACCACGGCC
GCAGGCCTGATGGTGGGTATCCCGGCCGTATTCTTCCATCGTTTCCTGCAGCGTCGTATTGACGACCTGGTGGTTGGCAT
GGAGCAGGAGGCAATCAAGCTGGTTGAAGTGGTTCAGGGCGACCGTGAAGTCGATATGGTCGGGAGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839