Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   V6985_RS19410 Genome accession   NZ_CP146071
Coordinates   4191186..4192625 (-) Length   479 a.a.
NCBI ID   WP_099994508.1    Uniprot ID   A0AAX3VN16
Organism   Aeromonas salmonicida strain GMT3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4186186..4197625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6985_RS19380 (V6985_19385) dagF 4186459..4187199 (+) 741 WP_058394613.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  V6985_RS19385 (V6985_19390) - 4187303..4189207 (+) 1905 WP_409011411.1 BglG family transcription antiterminator -
  V6985_RS19390 (V6985_19395) npr 4189226..4189498 (-) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  V6985_RS19395 (V6985_19400) rapZ 4189519..4190385 (-) 867 WP_005314405.1 RNase adapter RapZ -
  V6985_RS19400 (V6985_19405) ptsN 4190428..4190874 (-) 447 WP_005314406.1 PTS IIA-like nitrogen regulatory protein PtsN -
  V6985_RS19405 (V6985_19410) hpf 4190877..4191164 (-) 288 WP_409011412.1 ribosome hibernation promoting factor -
  V6985_RS19410 (V6985_19415) rpoN/rpoN1 4191186..4192625 (-) 1440 WP_099994508.1 RNA polymerase factor sigma-54 Machinery gene
  V6985_RS19415 (V6985_19420) lptB 4192691..4193416 (-) 726 WP_005314412.1 LPS export ABC transporter ATP-binding protein -
  V6985_RS19420 (V6985_19425) lptA 4193420..4193947 (-) 528 WP_005314414.1 lipopolysaccharide transport periplasmic protein LptA -
  V6985_RS19425 (V6985_19430) lptC 4193934..4194494 (-) 561 WP_059112773.1 LPS export ABC transporter periplasmic protein LptC -
  V6985_RS19430 (V6985_19435) kdsC 4194491..4195045 (-) 555 WP_059112772.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  V6985_RS19435 (V6985_19440) - 4195045..4196040 (-) 996 WP_034524103.1 KpsF/GutQ family sugar-phosphate isomerase -
  V6985_RS19440 (V6985_19445) mlaF 4196248..4197048 (+) 801 WP_011898278.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53877.82 Da        Isoelectric Point: 4.3484

>NTDB_id=941560 V6985_RS19410 WP_099994508.1 4191186..4192625(-) (rpoN/rpoN1) [Aeromonas salmonicida strain GMT3]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEVQETSPEEPVDDSQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLNEAREVIKEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVATCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=941560 V6985_RS19410 WP_099994508.1 4191186..4192625(-) (rpoN/rpoN1) [Aeromonas salmonicida strain GMT3]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAATCCTTTGCTTGAGCAAGAGGAGAATGAGG
TTCAGGAGACCAGCCCGGAAGAGCCCGTCGACGACAGTCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAACTGCCGGTAGATACCACCTGGGAAGATGTCTATTCAGCTGGCACAGCCCAGAGCGCAGGCCCCATCCACGATGG
GGAAGACAGCGTCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTCACCCCGTTCA
GTGATCTGGATGCGGCCATTGCGCTGGCCATCATAGATGCCATCGATGACTCCGGTTATCTGACCGTCTCTCTCGAAGAT
ATACAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAGCTCGACGAGGTCGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTCGGCCAGTACGCTCCTGAACTGCCCT
GGCTCAATGAGGCCAGGGAGGTAATCAAGGAGCACATGGACTTGCTCGGCAACCGTGATTACCGCACCCTGGCGCGCAAG
ACCAAGCTCAAGGAGAGTGACCTCAAGGAGGTGCTGGACCTTATCCAGCAACTGGAGCCCAGGCCGGGTAACGGCATCAT
ACAGAGTGACTCCCAGTACGTGATCCCGGATGTCACCGTCGTCAAGAAGGGCAACAAATGGGTCGTTGAGCTCAACCCGG
ATTCTGCACCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCGCGTACCAGCCAGGATACCCAGTTC
ATTCGCTCCCACTTGCAAGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCGAC
CTGTATTGTCGAGCAACAACAGGGCTTTTTCGAGTATGGTGAAGAAGCCATGAAGCCCATGGTGCTCAACGATATCGCCG
AGGCGGTGGAGATGCATGAGTCGACCATTTCTAGGGTAACGACCCAGAAATACATGCATACCCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAACACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.972

100

0.489