Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   V1210_RS04390 Genome accession   NZ_CP146066
Coordinates   884182..884898 (-) Length   238 a.a.
NCBI ID   WP_037538035.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SCT27     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 879182..889898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1210_RS04370 (V1210_04370) - 879222..880466 (+) 1245 WP_317955901.1 ammonium transporter -
  V1210_RS04375 (V1210_04375) - 880567..881526 (+) 960 WP_107611700.1 LacI family DNA-binding transcriptional regulator -
  V1210_RS04380 (V1210_04380) - 881611..883095 (+) 1485 WP_107613506.1 sucrose-6-phosphate hydrolase -
  V1210_RS04385 (V1210_04385) - 883099..884004 (+) 906 WP_107611698.1 carbohydrate kinase -
  V1210_RS04390 (V1210_04390) agrA 884182..884898 (-) 717 WP_037538035.1 LytTR family DNA-binding domain-containing protein Regulator
  V1210_RS04395 (V1210_04395) - 884917..886200 (-) 1284 WP_053017475.1 GHKL domain-containing protein -
  V1210_RS04400 (V1210_04400) - 886227..886367 (-) 141 WP_317955905.1 cyclic lactone autoinducer peptide -
  V1210_RS04405 (V1210_04405) - 886370..886936 (-) 567 WP_033079903.1 accessory gene regulator AgrB -
  V1210_RS04410 (V1210_04410) - 887666..888451 (-) 786 WP_326008341.1 carbon-nitrogen family hydrolase -
  V1210_RS04415 (V1210_04415) - 888614..889239 (-) 626 Protein_865 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27817.74 Da        Isoelectric Point: 5.2189

>NTDB_id=941508 V1210_RS04390 WP_037538035.1 884182..884898(-) (agrA) [Staphylococcus haemolyticus strain SCT27]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEVIEKSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPSQLQSRIIDCLETAHTRLKLLSKESTVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVNFKNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=941508 V1210_RS04390 WP_037538035.1 884182..884898(-) (agrA) [Staphylococcus haemolyticus strain SCT27]
ATGAAAATATTCATTTGTGAAGATGATGTAAAACAACGCGAAAATATGGTTTCAATTATTAATAATTACATTATGATTGA
AGAAAAACCTATGGAGATTGCGCTTGCAACAGACGATCCTTATGAAGTCATTGAAAAATCTAAAGAGATGAATGATGTCG
GATGTTACTTTCTAGATATTCAATTAGAGGCTGATATCAACGGTATTAAATTAGGTAGTGAAATTCGTAAGTATGACCCT
ATTGGAAATATCATATTCGTTACAAGTCATAGTGAGTTAACGTACCTAACCTTTGTTTACAAAGTGTCAGCAATGGATTT
TATCTTTAAAGATGATCCAAGCCAATTACAGTCAAGAATTATTGATTGCTTAGAAACTGCACACACTCGATTAAAATTAT
TATCTAAAGAAAGTACTGTTGAGACGATTGAATTGAAACGAGGAAGTAATTCAATTTATGTTCAATATGATGACGTAATG
TTTTTCGAATCATCTACAAAATCACATCGATTAATCGCACATTTAGATAATCGTCAAATTGAGTTCTATGGCAATTTAAA
AGAACTTGCACAACTTGATGAGCGGTTCTTTAGATGTCACAACAGCTTCGTTGTTAATAGACATAATATTGAATCCATAG
ATTCAAAAGAACGTATTGTCAATTTTAAAAACGGTGAGCACTGTTATGCTTCAGTTCGTAATGTCAAAAAAATATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

88.235

100

0.882