Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   V1211_RS00220 Genome accession   NZ_CP146065
Coordinates   49528..49698 (-) Length   56 a.a.
NCBI ID   WP_338594761.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SPS12     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 44528..54698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1211_RS00185 (V1211_00185) - 44616..44990 (+) 375 Protein_34 4Fe-4S single cluster domain-containing protein -
  V1211_RS00190 (V1211_00190) - 45194..46576 (+) 1383 WP_182703536.1 MDR family MFS transporter -
  V1211_RS00195 (V1211_00195) - 46656..47615 (+) 960 Protein_36 amidohydrolase family protein -
  V1211_RS00200 (V1211_00200) - 47748..48413 (-) 666 WP_107638370.1 hypothetical protein -
  V1211_RS00205 (V1211_00205) - 48424..48702 (+) 279 WP_107637973.1 restriction endonuclease subunit S -
  V1211_RS00210 (V1211_00210) - 48813..49034 (-) 222 WP_107525800.1 hypothetical protein -
  V1211_RS00215 (V1211_00215) - 49049..49234 (-) 186 Protein_40 DUF1643 domain-containing protein -
  V1211_RS00220 (V1211_00220) ccrB 49528..49698 (-) 171 WP_338594761.1 recombinase family protein Machinery gene
  V1211_RS00225 (V1211_00225) - 49819..50132 (-) 314 Protein_42 recombinase family protein -
  V1211_RS00230 (V1211_00230) - 50318..51687 (-) 1370 Protein_43 DUF927 domain-containing protein -
  V1211_RS00235 (V1211_00235) - 51687..51836 (-) 150 WP_182703541.1 hypothetical protein -
  V1211_RS00240 (V1211_00240) - 52018..52965 (-) 948 WP_233641484.1 hypothetical protein -
  V1211_RS00245 (V1211_00245) - 53142..53363 (+) 222 WP_107611666.1 GNAT family N-acetyltransferase -
  V1211_RS00250 (V1211_00250) - 53859..54206 (-) 348 WP_075100229.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6391.45 Da        Isoelectric Point: 10.4622

>NTDB_id=941467 V1211_RS00220 WP_338594761.1 49528..49698(-) (ccrB) [Staphylococcus haemolyticus strain SPS12]
MINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISILSLILSNHF

Nucleotide


Download         Length: 171 bp        

>NTDB_id=941467 V1211_RS00220 WP_338594761.1 49528..49698(-) (ccrB) [Staphylococcus haemolyticus strain SPS12]
ATGATCAATCAACATGAAGCGAATATTGTTAAATATATTTTTGAGTCATACGCTAAAGGTCATGGTTATCGTAAGATTGC
GAACGCATTAAATCATAAAGGTTATGTGACTAAGAAAGGGAAACCGTTTAGTATTTCTATTCTTTCACTTATTTTATCTA
ACCATTTTTAG

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(5-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

89.286

100

0.893