Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ABUS16_RS17685 Genome accession   NZ_CP169833
Coordinates   3636421..3637809 (+) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain Rp376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3631421..3642809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS16_RS17665 dapF 3632037..3632882 (-) 846 WP_000923484.1 diaminopimelate epimerase -
  ABUS16_RS17670 lysA 3632888..3634138 (-) 1251 WP_000011145.1 diaminopimelate decarboxylase -
  ABUS16_RS17675 - 3634161..3634385 (-) 225 WP_001255198.1 lipoprotein -
  ABUS16_RS17680 - 3634526..3635932 (-) 1407 WP_000070815.1 amino acid permease -
  ABUS16_RS17685 radA/sms 3636421..3637809 (+) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  ABUS16_RS17690 - 3637892..3638869 (+) 978 WP_000451848.1 Tim44 domain-containing protein -
  ABUS16_RS17695 epmA 3638928..3639902 (-) 975 WP_000059544.1 EF-P lysine aminoacylase EpmA -
  ABUS16_RS17700 - 3639899..3640966 (-) 1068 WP_000706080.1 4-phosphoerythronate dehydrogenase -
  ABUS16_RS17705 - 3641071..3641463 (-) 393 WP_000119198.1 YkvA family protein -
  ABUS16_RS17710 fdhD 3641583..3642374 (-) 792 WP_000187642.1 formate dehydrogenase accessory sulfurtransferase FdhD -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=941406 ABUS16_RS17685 WP_000048860.1 3636421..3637809(+) (radA/sms) [Acinetobacter baumannii strain Rp376]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=941406 ABUS16_RS17685 WP_000048860.1 3636421..3637809(+) (radA/sms) [Acinetobacter baumannii strain Rp376]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAGCTAGAACCCACTACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTTGCTAACATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGCATTAGCGAA
TTTGACCGTGTGCTTGGTGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCGGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCACATGGCAAGTGCAAAAAGTTCTGCACTTTATATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGCGCCCAACGCCTTGACCTACCAACAGACCAGTTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATCTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGCCATGTGACCAAAGAAGGTGCACTGGCAGGTCCGCGTGTTTTAGAGCATATGGTGGACTGCGTACTTTAC
TTTGAAGGTCAATCAGACTCCCGCTACCGTATGATTCGTGCTGTTAAAAACCGTTTTGGTGCAGTGAATGAGCTTGGCGT
ATTTGGCATGACTGATAAAGGCCTACGGGAAGTGGCCAATCCTTCTGCTATTTTCTTAAGTCGTTATGATGAAGCGATTC
CCGGCTCAATTGTCATGATTAGTCGTGAAGGAACTCGCCCTCTTTTGGTCGAGGTACAAGCTTTAGTTGATGATGCTCAA
GGACAACCACGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGTGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTACGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGGCTCTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGGTTTAAATACGTCATCTTACC
AAGAGGTAACGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCTGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTTAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422