Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8574_RS03410 Genome accession   NZ_AP028385
Coordinates   635583..635966 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain BCH-11320     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 630583..640966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8574_RS03390 (B11320_06760) - 630662..632596 (-) 1935 WP_070309992.1 RNB domain-containing ribonuclease -
  R8574_RS03395 (B11320_06770) ilvC 632715..633737 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  R8574_RS03400 (B11320_06780) - 633741..634823 (+) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  R8574_RS03405 (B11320_06790) dprA 634813..635586 (+) 774 WP_317644754.1 DNA-processing protein DprA Machinery gene
  R8574_RS03410 (B11320_06800) dprB 635583..635966 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  R8574_RS03415 (B11320_06810) - 635995..636834 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8574_RS03420 (B11320_06820) msrA 637010..637507 (-) 498 WP_317644758.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8574_RS03425 (B11320_06830) ppa 637549..638067 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8574_RS03430 (B11320_06840) adk 638077..638655 (-) 579 WP_002859580.1 adenylate kinase -
  R8574_RS03435 (B11320_06850) aspS 638652..640403 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=94133 R8574_RS03410 WP_002852281.1 635583..635966(+) (dprB) [Campylobacter jejuni strain BCH-11320]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=94133 R8574_RS03410 WP_002852281.1 635583..635966(+) (dprB) [Campylobacter jejuni strain BCH-11320]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment