Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V6K67_RS03805 Genome accession   NZ_CP145941
Coordinates   718058..718501 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI633     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 713058..723501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6K67_RS03785 (V6K67_03785) - 713580..714332 (-) 753 WP_011226910.1 NUDIX hydrolase -
  V6K67_RS03790 (V6K67_03790) - 714396..715502 (-) 1107 WP_011226911.1 AAA family ATPase -
  V6K67_RS03795 (V6K67_03795) gdhA 715846..717198 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  V6K67_RS03800 (V6K67_03800) - 717457..717867 (+) 411 WP_011225559.1 peptide deformylase -
  V6K67_RS03805 (V6K67_03805) rcrR 718058..718501 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  V6K67_RS03810 (V6K67_03810) rcrP 718505..720319 (+) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  V6K67_RS03815 (V6K67_03815) rcrQ 720309..722087 (+) 1779 WP_011226912.1 ABC transporter ATP-binding protein Regulator
  V6K67_RS03820 (V6K67_03820) - 722243..722491 (+) 249 WP_011225562.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=941250 V6K67_RS03805 WP_002945408.1 718058..718501(+) (rcrR) [Streptococcus thermophilus strain TCI633]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=941250 V6K67_RS03805 WP_002945408.1 718058..718501(+) (rcrR) [Streptococcus thermophilus strain TCI633]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537