Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABUS42_RS12095 Genome accession   NZ_CP169819
Coordinates   2516746..2517108 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain Lv419     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2511746..2522108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS12080 - 2514240..2515358 (-) 1119 WP_375581574.1 efflux RND transporter periplasmic adaptor subunit -
  ABUS42_RS12085 - 2515418..2516056 (-) 639 WP_002027721.1 hypothetical protein -
  ABUS42_RS12090 pilG 2516339..2516722 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ABUS42_RS12095 pilH 2516746..2517108 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  ABUS42_RS12100 - 2517169..2517705 (+) 537 WP_000729759.1 chemotaxis protein CheW -
  ABUS42_RS12105 - 2517752..2519830 (+) 2079 WP_000505936.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=941167 ABUS42_RS12095 WP_000101096.1 2516746..2517108(+) (pilH) [Acinetobacter baumannii strain Lv419]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=941167 ABUS42_RS12095 WP_000101096.1 2516746..2517108(+) (pilH) [Acinetobacter baumannii strain Lv419]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
TGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392