Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   V5M36_RS14505 Genome accession   NZ_CP145906
Coordinates   3200085..3201650 (+) Length   521 a.a.
NCBI ID   WP_338560277.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3195085..3206650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS14485 (V5M36_14485) - 3195573..3196877 (+) 1305 WP_338560269.1 homoserine dehydrogenase -
  V5M36_RS14490 (V5M36_14490) thrC 3196934..3198073 (+) 1140 WP_338560271.1 threonine synthase -
  V5M36_RS14495 (V5M36_14495) - 3198155..3199210 (-) 1056 WP_338560273.1 serine hydrolase -
  V5M36_RS14500 (V5M36_14500) - 3199432..3200067 (+) 636 WP_338560275.1 response regulator -
  V5M36_RS14505 (V5M36_14505) pilS 3200085..3201650 (+) 1566 WP_338560277.1 ATP-binding protein Regulator
  V5M36_RS14510 (V5M36_14510) pilR 3201675..3203084 (+) 1410 WP_338560279.1 sigma-54 dependent transcriptional regulator Regulator
  V5M36_RS14515 (V5M36_14515) - 3203193..3204374 (-) 1182 WP_338560282.1 S41 family peptidase -
  V5M36_RS14520 (V5M36_14520) gpmI 3204399..3205946 (-) 1548 WP_338560285.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59525.22 Da        Isoelectric Point: 6.3839

>NTDB_id=941076 V5M36_RS14505 WP_338560277.1 3200085..3201650(+) (pilS) [Acinetobacter sp. KS-LM10]
MMSIVSIPIYQTIYRLGSLYASYRLIIALSLTLIFKLTMDVSIEDYQYPNLYFYTLIVFTFCSLLQIIFLKYFPHVIGKQ
FLALFLIDLIYLSSLTFALGGPNIAIGLLFVISVFISNFLLSKNQALFITLIAVICVIYQQIVGSLFTDTSLNNISNSAL
LAFLFFVVYAIGQFSIQRFRLMETLNTLQANELFQLQNINRYILEQIEIGYLVLDDEFKIIVSNPAACTLLGISPLYVNE
KFNLAKVHPDLYEILNHSTNLDGERFKFESQQSSYLMDVRIQKLIVPHQALTLLILEDSQKLNQKVQKLKLAALGQLTAS
IAHEIRNPLAAIVQANELNQNLDSEQVLLNQIISKQALRIDKIIKDTLGMVNNKKTKTSRIDLNTFFNDLIHNDLHDVKH
QIKIQIEQKIYVYFDESQLSQVLINLIRNAIRHNSTHADFISIDIFNDDHHSFIDVIDYGKGIDKHNLSQIFQPFFSTEI
NGTGLGLYLSQIFCEANEATLNYIEQEHAGACFRIACQRIA

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=941076 V5M36_RS14505 WP_338560277.1 3200085..3201650(+) (pilS) [Acinetobacter sp. KS-LM10]
ATGATGTCTATCGTCTCAATACCAATCTACCAGACTATTTATCGTCTTGGTTCATTGTATGCAAGTTATCGATTAATAAT
TGCCCTCAGTTTAACGCTTATTTTTAAACTCACAATGGACGTGAGTATTGAAGATTATCAATATCCAAATCTATATTTTT
ACACGCTGATTGTTTTTACATTTTGTAGCTTATTACAGATTATATTTCTTAAATATTTTCCGCATGTAATTGGAAAACAA
TTTTTAGCATTGTTTTTAATCGATTTAATTTACTTAAGTTCACTGACTTTCGCGCTTGGAGGACCGAATATTGCGATTGG
CTTATTGTTTGTTATCTCGGTTTTTATTTCAAATTTTTTACTCAGTAAAAATCAGGCGCTTTTTATCACCTTAATTGCGG
TTATTTGCGTAATTTATCAACAAATTGTGGGTAGCCTATTTACTGATACCAGCCTCAATAATATTAGTAATAGTGCCTTA
CTGGCTTTTTTATTTTTTGTGGTCTACGCCATTGGTCAGTTTTCCATCCAACGCTTTCGATTGATGGAAACATTGAATAC
CTTACAAGCCAATGAACTATTTCAACTTCAAAATATTAATCGATATATTCTAGAACAAATTGAAATAGGCTATTTGGTTT
TAGATGATGAATTCAAAATTATCGTAAGTAACCCCGCAGCCTGCACATTACTCGGCATTTCACCGCTCTATGTCAATGAA
AAATTTAATCTTGCCAAAGTTCATCCCGATTTATATGAAATTTTGAATCATTCTACAAATTTAGACGGCGAGCGTTTTAA
ATTTGAATCACAACAAAGCTCATACTTGATGGATGTGCGCATTCAAAAATTAATTGTGCCACATCAAGCTCTGACACTCT
TAATTTTAGAGGATTCTCAAAAATTAAATCAGAAAGTTCAGAAACTGAAGCTCGCTGCATTGGGACAATTAACCGCCAGT
ATTGCCCATGAAATCCGAAATCCATTGGCTGCGATTGTACAGGCCAATGAACTTAATCAAAATCTGGATTCGGAACAAGT
CTTACTCAATCAAATCATCTCAAAACAAGCACTGCGTATCGATAAAATTATTAAAGATACCTTGGGTATGGTCAATAATA
AAAAAACAAAAACCAGTCGAATTGATCTCAATACTTTTTTTAACGATTTAATTCACAATGATCTTCATGACGTCAAACAT
CAAATTAAAATTCAAATCGAACAAAAAATTTACGTTTATTTTGATGAGTCACAATTAAGCCAAGTACTCATTAATCTTAT
TCGTAATGCAATTCGCCATAATTCAACTCATGCCGATTTTATTAGCATAGATATTTTTAATGATGACCATCATAGCTTTA
TAGATGTCATCGATTATGGTAAAGGTATTGATAAACATAATTTATCTCAAATTTTTCAACCATTTTTTAGTACCGAAATC
AATGGAACTGGTTTAGGATTATATTTATCTCAAATTTTTTGTGAGGCCAATGAAGCCACACTGAATTATATCGAGCAAGA
ACACGCAGGCGCATGCTTTAGAATTGCATGCCAAAGAATAGCTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-368)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

55.403

97.697

0.541