Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   V5M36_RS14355 Genome accession   NZ_CP145906
Coordinates   3168736..3169059 (-) Length   107 a.a.
NCBI ID   WP_338560216.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3163736..3174059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS14340 (V5M36_14340) gspD 3164643..3166931 (-) 2289 WP_338560210.1 type II secretion system secretin GspD -
  V5M36_RS14345 (V5M36_14345) - 3166973..3167839 (-) 867 WP_338560212.1 type II secretion system protein N -
  V5M36_RS14350 (V5M36_14350) gspN 3167820..3168569 (-) 750 WP_338560214.1 type II secretion system protein N -
  V5M36_RS14355 (V5M36_14355) hns 3168736..3169059 (-) 324 WP_338560216.1 H-NS histone family protein Regulator
  V5M36_RS14360 (V5M36_14360) - 3169332..3169763 (-) 432 WP_338560218.1 thioesterase family protein -
  V5M36_RS14365 (V5M36_14365) - 3169771..3170964 (-) 1194 WP_338560220.1 heme biosynthesis protein HemY -
  V5M36_RS14370 (V5M36_14370) - 3170969..3171805 (-) 837 WP_338560222.1 hypothetical protein -
  V5M36_RS14375 (V5M36_14375) - 3171802..3172596 (-) 795 WP_338560224.1 uroporphyrinogen-III synthase -
  V5M36_RS14380 (V5M36_14380) hemC 3172596..3173519 (-) 924 WP_338564250.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12221.96 Da        Isoelectric Point: 8.4280

>NTDB_id=941074 V5M36_RS14355 WP_338560216.1 3168736..3169059(-) (hns) [Acinetobacter sp. KS-LM10]
MPDISNLSVEELKKLTAEAAVLIESKKEQAVEDAYNQILEIAETAGMTLEQFIEYGSHKRKKTTRKAVEPRYRNKNNTAD
TWTGRGKKPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=941074 V5M36_RS14355 WP_338560216.1 3168736..3169059(-) (hns) [Acinetobacter sp. KS-LM10]
ATGCCGGATATTAGTAATCTATCAGTTGAAGAGTTAAAGAAATTAACAGCAGAAGCGGCTGTATTAATTGAATCAAAGAA
AGAGCAAGCTGTTGAAGATGCTTATAATCAGATTCTAGAAATTGCTGAAACTGCAGGTATGACTTTAGAGCAATTTATTG
AATATGGTTCTCACAAGCGTAAAAAAACCACGCGTAAGGCTGTAGAACCTCGTTATCGCAACAAAAATAACACGGCTGAT
ACTTGGACTGGACGTGGAAAAAAACCACGTTGGTTGGTTGCTGAATTAGAGAAAGGTGCGAAATTAGAAGATTTTCTTAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75.472

99.065

0.748