Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABUS27_RS09715 Genome accession   NZ_CP169811
Coordinates   2047732..2048367 (-) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Lv371     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2042732..2053367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS27_RS09690 - 2042788..2043768 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS27_RS09695 kdsB 2043780..2044541 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABUS27_RS09700 lpxK 2044551..2045561 (-) 1011 WP_000050447.1 tetraacyldisaccharide 4'-kinase -
  ABUS27_RS09705 msbA 2045564..2047291 (-) 1728 WP_001070725.1 lipid A export permease/ATP-binding protein MsbA -
  ABUS27_RS09710 - 2047288..2047716 (-) 429 WP_000669686.1 biopolymer transporter ExbD -
  ABUS27_RS09715 exbB 2047732..2048367 (-) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABUS27_RS09720 - 2048417..2049304 (-) 888 WP_000023427.1 ParB/RepB/Spo0J family partition protein -
  ABUS27_RS09725 - 2049301..2050083 (-) 783 WP_000057212.1 ParA family protein -
  ABUS27_RS09730 rsmG 2050105..2050737 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABUS27_RS09735 murU 2050825..2051514 (-) 690 WP_000646451.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABUS27_RS09740 - 2051514..2052527 (-) 1014 WP_001096102.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=941073 ABUS27_RS09715 WP_000264035.1 2047732..2048367(-) (exbB) [Acinetobacter baumannii strain Lv371]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=941073 ABUS27_RS09715 WP_000264035.1 2047732..2048367(-) (exbB) [Acinetobacter baumannii strain Lv371]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393