Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   V5M36_RS06635 Genome accession   NZ_CP145906
Coordinates   1452128..1452529 (+) Length   133 a.a.
NCBI ID   WP_338563331.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447128..1457529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS06605 (V5M36_06605) kdsB 1447892..1448653 (+) 762 WP_338563319.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V5M36_RS06610 (V5M36_06610) - 1448675..1449658 (+) 984 WP_338564083.1 DNA polymerase III subunit delta' -
  V5M36_RS06615 (V5M36_06615) - 1449715..1450056 (+) 342 WP_338563322.1 PilZ domain-containing protein -
  V5M36_RS06620 (V5M36_06620) - 1450087..1450863 (+) 777 WP_338563324.1 TatD family hydrolase -
  V5M36_RS06625 (V5M36_06625) - 1450909..1451523 (+) 615 WP_338563326.1 TetR/AcrR family transcriptional regulator -
  V5M36_RS06630 (V5M36_06630) - 1451527..1452141 (+) 615 WP_338563327.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  V5M36_RS06635 (V5M36_06635) xcpV 1452128..1452529 (+) 402 WP_338563331.1 type II secretion system minor pseudopilin GspI Machinery gene
  V5M36_RS06640 (V5M36_06640) xcpW 1452526..1453164 (+) 639 WP_338563334.1 type II secretion system minor pseudopilin GspJ Machinery gene
  V5M36_RS06645 (V5M36_06645) gspK 1453211..1454158 (+) 948 WP_338563336.1 type II secretion system minor pseudopilin GspK -
  V5M36_RS06650 (V5M36_06650) - 1454320..1454916 (+) 597 WP_338563339.1 6-carboxytetrahydropterin synthase -
  V5M36_RS06655 (V5M36_06655) ung 1454953..1455666 (+) 714 WP_338563342.1 uracil-DNA glycosylase -
  V5M36_RS06660 (V5M36_06660) - 1455663..1456784 (+) 1122 WP_338563345.1 enoyl-CoA hydratase/isomerase family protein -
  V5M36_RS06665 (V5M36_06665) tadA 1456792..1457334 (+) 543 WP_338563347.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14746.88 Da        Isoelectric Point: 7.0112

>NTDB_id=941063 V5M36_RS06635 WP_338563331.1 1452128..1452529(+) (xcpV) [Acinetobacter sp. KS-LM10]
MKTHKGFTLIEVVVALAIFAVAAMALTKVAMQYTQSTANAILRTKAQFVAQNEIAKMQMNGEWLEGTQSEQFTAQGETWQ
IDKRSESTISPNVQKIEIQVSLFNNESGKVEAGITNMVFYNYPIKTAAQVNQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=941063 V5M36_RS06635 WP_338563331.1 1452128..1452529(+) (xcpV) [Acinetobacter sp. KS-LM10]
ATGAAAACTCATAAGGGATTTACCTTGATCGAGGTTGTCGTTGCGCTGGCTATTTTTGCAGTTGCAGCAATGGCATTAAC
CAAAGTTGCTATGCAATATACTCAATCAACAGCCAACGCCATTTTAAGAACAAAAGCACAGTTTGTCGCCCAAAACGAAA
TCGCAAAAATGCAAATGAATGGTGAGTGGCTTGAAGGGACGCAATCAGAACAATTCACAGCTCAAGGTGAAACGTGGCAA
ATTGATAAACGATCCGAATCTACCATCAGTCCAAATGTACAAAAAATTGAAATACAAGTAAGTCTATTTAATAACGAAAG
TGGCAAGGTTGAAGCAGGGATAACAAATATGGTGTTTTATAACTATCCAATTAAAACTGCTGCGCAAGTAAATCAACCAT
GA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type II secretion system (T2SS), protein I (T2SSI)

(43-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76.033

90.977

0.692