Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V5J77_RS00755 Genome accession   NZ_CP145905
Coordinates   157557..157985 (+) Length   142 a.a.
NCBI ID   WP_338556488.1    Uniprot ID   -
Organism   Paenibacillus sp. KS-LC4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 152557..162985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5J77_RS00725 (V5J77_00725) - 153318..153929 (-) 612 WP_338553895.1 hypothetical protein -
  V5J77_RS00735 (V5J77_00735) - 154694..155041 (+) 348 WP_338553896.1 hypothetical protein -
  V5J77_RS00740 (V5J77_00740) - 155056..155214 (+) 159 WP_338553897.1 small acid-soluble spore protein P -
  V5J77_RS00745 (V5J77_00745) - 155352..156395 (+) 1044 WP_338553898.1 hypothetical protein -
  V5J77_RS00750 (V5J77_00750) - 156547..157305 (+) 759 WP_338553899.1 DsbA family oxidoreductase -
  V5J77_RS00755 (V5J77_00755) nucA/comI 157557..157985 (+) 429 WP_338556488.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V5J77_RS00760 (V5J77_00760) - 158366..160855 (+) 2490 WP_338553900.1 collagen-like protein -
  V5J77_RS00765 (V5J77_00765) - 160934..162037 (+) 1104 WP_338553901.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15623.70 Da        Isoelectric Point: 6.4636

>NTDB_id=941025 V5J77_RS00755 WP_338556488.1 157557..157985(+) (nucA/comI) [Paenibacillus sp. KS-LC4]
MKNAFISLLIMLALAGASYMGWLDELAKDWNTAEGTDYTLYFPTDRYPETGKHIKDAIAAGKSPICTIDRDGADQNRKKS
LQGVKVKKGFDRDEWPMAMCAEGGSGAHIAYIDPSDNRGAGSWVSNQLEKYPDGSRIAFVIK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=941025 V5J77_RS00755 WP_338556488.1 157557..157985(+) (nucA/comI) [Paenibacillus sp. KS-LC4]
ATGAAAAATGCCTTTATTTCCTTGCTTATTATGCTGGCTTTGGCTGGTGCATCCTATATGGGCTGGCTCGATGAGCTGGC
GAAAGATTGGAATACGGCAGAAGGAACGGACTATACGTTATATTTTCCGACTGATCGGTATCCGGAGACAGGCAAGCACA
TTAAAGATGCGATTGCTGCGGGAAAATCCCCTATTTGTACGATTGATCGGGATGGCGCGGATCAGAATCGAAAGAAATCA
TTGCAGGGCGTCAAGGTGAAAAAAGGCTTTGATCGTGATGAATGGCCAATGGCTATGTGTGCAGAAGGCGGGAGCGGAGC
ACATATTGCTTATATTGACCCATCGGATAATCGCGGTGCAGGGTCGTGGGTCAGCAACCAGCTGGAGAAATATCCCGATG
GCTCGAGAATTGCTTTTGTCATCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.678

85.211

0.5