Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8610_RS05860 Genome accession   NZ_AP028384
Coordinates   1143186..1143680 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11253     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1138186..1148680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8610_RS05845 (B11253_11500) - 1139572..1140750 (-) 1179 WP_052775518.1 metal-dependent hydrolase -
  R8610_RS05850 (B11253_11510) gpsA 1140760..1141656 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8610_RS05855 (B11253_11520) gatB 1141653..1143071 (-) 1419 WP_002859278.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8610_RS05860 (B11253_11530) luxS 1143186..1143680 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  R8610_RS05865 (B11253_11540) - 1143992..1144984 (+) 993 WP_002921342.1 isopenicillin N synthase family dioxygenase -
  R8610_RS05870 (B11253_11550) - 1144995..1145765 (+) 771 WP_002921341.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8610_RS05875 (B11253_11560) metE 1145777..1148041 (+) 2265 WP_002884422.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=94100 R8610_RS05860 WP_002859279.1 1143186..1143680(+) (luxS) [Campylobacter jejuni strain BCH-11253]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=94100 R8610_RS05860 WP_002859279.1 1143186..1143680(+) (luxS) [Campylobacter jejuni strain BCH-11253]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment