Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V6670_RS20835 Genome accession   NZ_CP145889
Coordinates   4264221..4265171 (-) Length   316 a.a.
NCBI ID   WP_036128401.1    Uniprot ID   A0A0W7Y7I7
Organism   Lysinibacillus sp. Y5S-8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4259221..4270171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6670_RS20810 (V6670_20810) - 4260478..4261017 (+) 540 WP_338652016.1 hypothetical protein -
  V6670_RS20815 (V6670_20815) - 4261109..4261423 (-) 315 WP_036128393.1 antibiotic biosynthesis monooxygenase -
  V6670_RS20820 (V6670_20820) - 4261425..4262450 (-) 1026 WP_036128395.1 siderophore ABC transporter substrate-binding protein -
  V6670_RS20825 (V6670_20825) - 4262517..4263278 (-) 762 WP_036128397.1 ABC transporter ATP-binding protein -
  V6670_RS20830 (V6670_20830) - 4263275..4264228 (-) 954 WP_036128399.1 iron chelate uptake ABC transporter family permease subunit -
  V6670_RS20835 (V6670_20835) ceuB 4264221..4265171 (-) 951 WP_036128401.1 ABC transporter permease Machinery gene
  V6670_RS20840 (V6670_20840) - 4265456..4266508 (-) 1053 WP_036128403.1 membrane protein -
  V6670_RS20845 (V6670_20845) menC 4266551..4267657 (-) 1107 WP_141904271.1 o-succinylbenzoate synthase -
  V6670_RS20850 (V6670_20850) - 4267679..4268503 (-) 825 WP_338652017.1 GNAT family N-acetyltransferase -
  V6670_RS20855 (V6670_20855) - 4268503..4269648 (-) 1146 WP_036128409.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34826.02 Da        Isoelectric Point: 10.1462

>NTDB_id=940986 V6670_RS20835 WP_036128401.1 4264221..4265171(-) (ceuB) [Lysinibacillus sp. Y5S-8]
MKIRYLLTATIVLSIVSLFIGVIDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMYGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYISVPVLILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=940986 V6670_RS20835 WP_036128401.1 4264221..4265171(-) (ceuB) [Lysinibacillus sp. Y5S-8]
ATGAAAATAAGATATCTTTTAACAGCAACGATTGTGCTGTCTATTGTGTCGCTATTTATCGGAGTAATAGATATTAAGCC
TAGCGACCTATTAGACTTTCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCTATTTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTATCGCCAACAACAGCG
GGTACATTAGATGCCACGCGGTTGGGTGTATTGATTTCCATGATGTTCTTTACGAATGTCACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTATGGAAATATTTTGTCCTCCGTTACAACATTCTTTGCGTACAAGGCGAATATTATC
CAGAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTATGAACTGTTATACATAAGTGTGCC
AGTACTTATTTTAGCTTACATTTACGCAAATCGTTTTACTGTAGCTGGGATGGGAGAGGATTTTGCAAAAAACCTTGGTC
TATCCTATAAATTTGTGGTGAATTTAGGCTTAGTGTTGGTAGCCCTTATCTCCACAACAGTGGTGTTAACAGTCGGTGTC
ATTCCTTTCCTTGGTTTGATCATTCCAAACATAATTTCACTGTTTAAAGGTGATAATTTGGCAAAAACCTTGCCACATAC
AGCATTACTTGGTATGTCATTTTTATTATTCTGCGATATTTTGGGACGTGTACTGATTTTCCCTTATGAAATACCAATTA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W7Y7I7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528