Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V6669_RS28135 Genome accession   NZ_CP145887
Coordinates   6414799..6415752 (-) Length   317 a.a.
NCBI ID   WP_091036063.1    Uniprot ID   -
Organism   Paenibacillus sp. Y5S-9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6409799..6420752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6669_RS28115 (V6669_28115) - 6410282..6411877 (-) 1596 WP_338588900.1 spore germination protein -
  V6669_RS28120 (V6669_28120) - 6412053..6413039 (-) 987 WP_338588902.1 siderophore ABC transporter substrate-binding protein -
  V6669_RS28125 (V6669_28125) - 6413082..6413840 (-) 759 WP_338588904.1 ABC transporter ATP-binding protein -
  V6669_RS28130 (V6669_28130) - 6413834..6414802 (-) 969 WP_338588906.1 iron chelate uptake ABC transporter family permease subunit -
  V6669_RS28135 (V6669_28135) ceuB 6414799..6415752 (-) 954 WP_091036063.1 ABC transporter permease Machinery gene
  V6669_RS28140 (V6669_28140) - 6416000..6416335 (-) 336 WP_338588910.1 hypothetical protein -
  V6669_RS28145 (V6669_28145) - 6416380..6417081 (-) 702 WP_315937470.1 pirin family protein -
  V6669_RS28150 (V6669_28150) - 6417282..6417695 (-) 414 WP_091036057.1 DoxX family protein -
  V6669_RS28155 (V6669_28155) - 6417748..6418608 (-) 861 WP_338588917.1 M56 family metallopeptidase -
  V6669_RS28160 (V6669_28160) - 6418610..6419026 (-) 417 WP_017691824.1 BlaI/MecI/CopY family transcriptional regulator -
  V6669_RS28165 (V6669_28165) - 6419237..6420700 (-) 1464 WP_338595072.1 catalase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35008.16 Da        Isoelectric Point: 10.0976

>NTDB_id=940953 V6669_RS28135 WP_091036063.1 6414799..6415752(-) (ceuB) [Paenibacillus sp. Y5S-9]
MKLRYMLIVLAVLSIVYIFIGNSDISPLDIFHLSSVQLQVLQVSRFPRLISILVAGISMSVIGLIMQQLTRNRFVSPTTA
GTMDSARLGILVTLMWFPGASPLQKMLVAFAFALAGTLIFMRILEKVKFKDTIYIALLGLMFGNIVSSVTTFFAYKNDLI
QNISSWLQGDFSTIMKGRYELIYISIPLLIIVYLFANRFTLAGMGEDFSTNLGLAYRRVVNIGLILVAMVSAVVIITVGT
IPFLGLVVPNIVTLYKGDNLRDTLPHTAVLGAIFVLVCDILGQLIIYPYQLSISLTVGVVGSVLFLYLLLRRKAYGS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=940953 V6669_RS28135 WP_091036063.1 6414799..6415752(-) (ceuB) [Paenibacillus sp. Y5S-9]
ATGAAGTTACGTTATATGTTGATCGTATTGGCTGTATTGTCTATCGTATACATATTTATTGGCAATTCAGACATTTCACC
ATTGGATATATTTCATTTGTCCTCTGTCCAGCTACAGGTATTACAAGTTAGCCGGTTTCCCCGCTTGATCAGCATCCTTG
TCGCCGGGATCAGCATGAGTGTAATCGGACTGATTATGCAGCAGCTGACACGCAACCGATTCGTTTCCCCAACAACAGCT
GGAACGATGGATTCCGCCAGATTGGGTATTCTTGTGACGTTAATGTGGTTCCCGGGAGCATCCCCTCTGCAAAAAATGTT
GGTCGCTTTTGCCTTTGCTCTGGCGGGAACACTGATTTTCATGCGAATTCTGGAGAAAGTCAAGTTCAAGGATACGATAT
ATATCGCTTTGCTAGGTCTTATGTTTGGCAACATTGTAAGCTCCGTGACAACATTTTTTGCTTACAAAAACGACCTGATC
CAGAACATTTCTTCTTGGTTACAGGGTGACTTCTCCACCATCATGAAGGGACGTTATGAACTGATCTATATCAGTATTCC
GTTGCTCATTATCGTGTACCTGTTTGCTAATCGTTTTACACTCGCAGGGATGGGCGAAGATTTCTCAACCAACCTTGGAC
TGGCGTATCGACGAGTTGTGAATATCGGACTGATCCTGGTGGCGATGGTTTCAGCGGTAGTGATTATTACGGTAGGTACA
ATTCCGTTTCTGGGCCTAGTCGTGCCCAATATCGTAACACTGTACAAAGGGGATAACTTACGTGATACATTGCCTCATAC
GGCAGTGCTTGGTGCGATCTTCGTTCTGGTCTGCGATATTCTGGGTCAATTAATTATTTATCCTTATCAACTTTCGATCA
GTCTGACGGTGGGAGTTGTGGGAAGTGTATTATTCCTGTATTTACTGCTTCGAAGAAAGGCTTATGGATCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.633

99.685

0.505