Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8610_RS05245 Genome accession   NZ_AP028384
Coordinates   1023456..1024007 (+) Length   183 a.a.
NCBI ID   WP_002921394.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11253     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1018456..1029007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8610_RS05220 (B11253_10230) rseP 1018631..1019737 (+) 1107 WP_002921407.1 RIP metalloprotease RseP -
  R8610_RS05225 (B11253_10240) - 1019730..1020590 (+) 861 WP_002921400.1 VirK family antimicrobial peptide resistance protein -
  R8610_RS05230 (B11253_10250) - 1020583..1021584 (-) 1002 WP_002921398.1 sugar phosphate isomerase/epimerase family protein -
  R8610_RS05235 (B11253_10260) - 1021581..1022855 (-) 1275 WP_317652866.1 MFS transporter -
  R8610_RS05240 (B11253_10270) rpsF 1023070..1023447 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8610_RS05245 (B11253_10280) ssb 1023456..1024007 (+) 552 WP_002921394.1 single-stranded DNA-binding protein Machinery gene
  R8610_RS05250 (B11253_10290) rpsR 1024018..1024278 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8610_RS05255 (B11253_10300) lon 1024338..1026713 (-) 2376 WP_317652868.1 endopeptidase La -
  R8610_RS05260 (B11253_10310) bamD 1026730..1027377 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  R8610_RS05265 (B11253_10320) fliW 1027538..1027927 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8610_RS05270 (B11253_10330) proC 1027927..1028658 (+) 732 WP_002921390.1 pyrroline-5-carboxylate reductase Machinery gene
  R8610_RS05275 (B11253_10340) ctsT 1028655..1028957 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20740.63 Da        Isoelectric Point: 5.0431

>NTDB_id=94093 R8610_RS05245 WP_002921394.1 1023456..1024007(+) (ssb) [Campylobacter jejuni strain BCH-11253]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=94093 R8610_RS05245 WP_002921394.1 1023456..1024007(+) (ssb) [Campylobacter jejuni strain BCH-11253]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393

Multiple sequence alignment