Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAEM60_RS14845 Genome accession   NZ_CP145886
Coordinates   2935394..2937103 (-) Length   569 a.a.
NCBI ID   WP_299738286.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2930394..2942103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS14820 (V2W31_14820) - 2931296..2931535 (+) 240 WP_299738277.1 DUF2627 domain-containing protein -
  AAEM60_RS14825 (V2W31_14825) - 2931550..2932284 (-) 735 WP_299738278.1 glycerophosphodiester phosphodiesterase -
  AAEM60_RS14830 (V2W31_14830) - 2932471..2932656 (-) 186 WP_299738280.1 hypothetical protein -
  AAEM60_RS14835 (V2W31_14835) spo0A 2932884..2933663 (-) 780 WP_299738282.1 sporulation transcription factor Spo0A -
  AAEM60_RS14840 (V2W31_14840) spoIVB 2933979..2935268 (-) 1290 WP_341356579.1 SpoIVB peptidase -
  AAEM60_RS14845 (V2W31_14845) recN 2935394..2937103 (-) 1710 WP_299738286.1 DNA repair protein RecN Machinery gene
  AAEM60_RS14850 (V2W31_14850) argR 2937228..2937677 (-) 450 WP_044340153.1 transcriptional regulator ArgR -
  AAEM60_RS14855 (V2W31_14855) - 2938212..2939045 (-) 834 WP_341358004.1 TlyA family RNA methyltransferase -
  AAEM60_RS14860 (V2W31_14860) dxs 2939048..2940940 (-) 1893 WP_341356580.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAEM60_RS14865 (V2W31_14865) - 2940962..2941585 (-) 624 WP_299738291.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 64242.23 Da        Isoelectric Point: 5.3516

>NTDB_id=940909 AAEM60_RS14845 WP_299738286.1 2935394..2937103(-) (recN) [Rossellomorea sp. y25]
MLQELSIKNFAIIESLSLSFEEGLTVLSGETGAGKSIIIDAIHLLVGGRGSSEYVRHGEKKAEIEGLFILDNETHPCFLK
AASFGIEIEEGMIILRRDISSSGKSVCRINGKLVTIAIMREIGASLIDIHGQHEHQELMNESLHLSLLDQFGGKEIASGL
SSYGEVYKEYLSIYKQLNRLNENEQEMAHRLDLIQFQLKEIHDANLQLNEDDELQEEKRKLMNFEKLFEALQTSYDSIQG
ERKGLDWTGLAMSHLETAAEVDSQYEKTLESVSNAFYMLEDAAHQVRGELDQLEFEPNRLDLIEARLNEINGLKRKYGSS
VEEILAYSSKIEEEIETIMNKDSHVEHLQSKLQSLEKDLSLEAKNLSQTRKQWAKKLTASIHEQLKQLYMDKTKFEVRFV
KSGENESFSFQHFKKDGWDTVEFYISTNPGEPLKPLSKVASGGELSRIMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQ
AIAEKIYQVAIHSQVMCISHLPQVAAMADCHLFISKKLSGGRTSTMVKRLREKEKIKEISRMISGVEITDLTLEHAKELL
QLAGSIKET

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=940909 AAEM60_RS14845 WP_299738286.1 2935394..2937103(-) (recN) [Rossellomorea sp. y25]
TTGCTACAAGAACTATCAATCAAAAATTTCGCCATAATCGAATCCCTCTCTCTTTCCTTTGAAGAAGGTCTGACCGTTTT
ATCAGGTGAGACTGGTGCAGGTAAGTCGATTATCATTGATGCCATTCATTTACTGGTTGGTGGAAGAGGATCCTCAGAAT
ACGTGCGGCATGGGGAGAAAAAGGCTGAAATTGAAGGGTTATTTATTCTTGATAATGAAACTCATCCTTGCTTTCTTAAA
GCAGCGAGCTTCGGGATAGAGATCGAAGAAGGAATGATCATTCTTCGACGGGATATCTCGAGCAGTGGAAAAAGTGTTTG
CAGAATCAATGGTAAGCTCGTGACGATTGCGATTATGAGGGAAATCGGGGCTTCACTTATTGATATACATGGACAGCATG
AGCATCAAGAACTGATGAATGAAAGCCTGCATCTTTCCTTACTGGATCAATTTGGAGGGAAAGAGATTGCTTCTGGTCTC
TCGAGTTACGGGGAAGTATATAAAGAGTACCTTTCCATTTATAAGCAGCTTAACAGGCTCAATGAGAACGAGCAGGAGAT
GGCGCATCGTTTGGATCTGATTCAGTTTCAGCTGAAAGAAATTCATGATGCAAACCTGCAATTAAATGAAGATGATGAGC
TGCAGGAAGAGAAAAGGAAGCTTATGAACTTTGAAAAGCTTTTTGAGGCGTTGCAGACGTCCTATGACAGCATTCAAGGT
GAGAGAAAAGGGCTTGACTGGACTGGACTTGCTATGAGTCATCTCGAGACAGCTGCAGAAGTGGATTCTCAATATGAAAA
GACTCTGGAATCTGTTTCGAATGCTTTTTATATGCTTGAAGACGCTGCTCACCAAGTAAGGGGAGAGTTAGATCAGCTGG
AATTTGAACCAAACCGTTTGGATCTCATTGAGGCGAGACTGAATGAGATTAACGGTTTAAAGAGAAAGTATGGTTCTTCT
GTAGAAGAAATTCTGGCATATAGTTCAAAGATCGAAGAAGAAATTGAAACCATCATGAACAAAGATTCACATGTGGAACA
TTTACAAAGCAAATTACAATCACTCGAGAAAGATTTATCATTAGAGGCGAAAAATCTGTCGCAGACAAGAAAGCAGTGGG
CGAAAAAATTAACTGCAAGTATTCATGAGCAGCTAAAGCAACTTTATATGGATAAAACGAAATTTGAAGTTCGCTTTGTG
AAAAGTGGAGAAAATGAATCGTTTTCCTTTCAGCATTTTAAAAAGGATGGTTGGGACACAGTGGAGTTTTACATATCCAC
CAATCCAGGGGAGCCTTTAAAGCCGTTATCCAAAGTTGCTTCAGGTGGGGAGCTTTCCCGCATTATGTTAGCTATGAAGA
CGATCTTTTCAAAGCACCAGGGAATTACCTCCATCATTTTTGATGAGGTCGATACAGGAGTAAGTGGAAGAGTCGCACAG
GCGATCGCTGAAAAAATTTATCAGGTCGCCATTCATTCCCAGGTGATGTGTATATCTCACTTACCGCAAGTAGCTGCAAT
GGCAGATTGTCACTTGTTTATTTCGAAAAAACTTTCAGGCGGCAGAACGAGTACAATGGTTAAACGTCTTCGAGAGAAGG
AAAAGATCAAAGAAATCTCCAGGATGATTTCAGGAGTGGAAATTACAGATTTAACATTGGAACACGCAAAGGAATTGTTG
CAATTAGCAGGATCCATAAAAGAAACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.617