Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AAEM60_RS08295 Genome accession   NZ_CP145886
Coordinates   1664999..1666822 (+) Length   607 a.a.
NCBI ID   WP_299740280.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1659999..1671822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS08275 (V2W31_08275) spxA 1660626..1661021 (+) 396 WP_032089161.1 transcriptional regulator SpxA -
  AAEM60_RS08280 (V2W31_08280) mecA 1661378..1662049 (+) 672 WP_299740275.1 adaptor protein MecA -
  AAEM60_RS08285 (V2W31_08285) cls 1662128..1663633 (+) 1506 WP_299740277.1 cardiolipin synthase -
  AAEM60_RS08290 (V2W31_08290) - 1663723..1664910 (+) 1188 WP_341357805.1 competence protein CoiA family protein -
  AAEM60_RS08295 (V2W31_08295) pepF 1664999..1666822 (+) 1824 WP_299740280.1 oligoendopeptidase F Regulator
  AAEM60_RS08300 (V2W31_08300) - 1666936..1667124 (-) 189 WP_299740282.1 hypothetical protein -
  AAEM60_RS08305 (V2W31_08305) - 1667410..1668276 (-) 867 WP_341357806.1 ClpXP adapter SpxH family protein -
  AAEM60_RS08310 (V2W31_08310) - 1668269..1668670 (-) 402 WP_341357807.1 globin -
  AAEM60_RS08315 (V2W31_08315) - 1668944..1669585 (-) 642 WP_341357808.1 lytic transglycosylase domain-containing protein -
  AAEM60_RS08320 (V2W31_08320) - 1669639..1670220 (-) 582 WP_341357809.1 CYTH domain-containing protein -
  AAEM60_RS08325 (V2W31_08325) - 1670873..1671247 (+) 375 WP_299740291.1 hypothetical protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70425.83 Da        Isoelectric Point: 4.7245

>NTDB_id=940900 AAEM60_RS08295 WP_299740280.1 1664999..1666822(+) (pepF) [Rossellomorea sp. y25]
MSKDTATKSLPGRKEVEEKLTWRLEDIFESDEAWEKEYKEIKELTDKADEFKGTLRDSADQLYKAFAFQDEIMERMGKVY
TYSHMRYDQDTTNSYYQGLDDRAKSLYTQLGSKFAYLVPEVLSIEESKLQGFLDEKEDLRKYKHALEEINLQRPHVLSAE
EEALLAQASEVFSAASNTFGMLNNADLEFPSIKDENGEEVDITHGRFIRFLESSDRRVREEAFKKVYETYGKFENTFAST
LSGAVKKDNFVANVRHYDSARHAALSNNNIPEQVYDNLVDTVNKNLHLLQRYVKLRKKVLGLDEVHMYDLYTPLVKEVKM
DISYDEAQDMILDGLKPLGDEYANVLKEGFDNRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKAQPYTYGHYSIFVAEVASTCNEALLNDYLLNTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHKKAQ
EGEALTSEFLTKEYYELNKKYFGEDISIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSQQILEEGEPAVKRYIDFL
KAGSSDYPIEVLKKAGVDMTTSKPVEDACKVFEEKLNEMEELLEKLQ

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=940900 AAEM60_RS08295 WP_299740280.1 1664999..1666822(+) (pepF) [Rossellomorea sp. y25]
ATGTCAAAAGATACAGCTACGAAAAGTCTGCCTGGTAGAAAAGAGGTAGAGGAGAAGTTAACGTGGAGATTGGAAGATAT
ATTTGAAAGTGATGAAGCGTGGGAAAAAGAATATAAAGAGATAAAAGAATTGACCGACAAAGCAGACGAGTTTAAAGGAA
CATTAAGGGATAGTGCAGATCAGCTATATAAAGCATTTGCCTTTCAGGATGAAATTATGGAACGTATGGGTAAGGTTTAT
ACATATTCTCATATGCGCTATGATCAGGATACAACGAATTCTTACTATCAGGGTCTCGATGACCGCGCCAAAAGTCTTTA
TACACAATTAGGAAGTAAATTTGCCTACTTAGTACCCGAAGTGCTATCGATTGAGGAAAGTAAGCTGCAAGGGTTTCTTG
ACGAAAAAGAAGATCTGAGGAAATACAAGCATGCTTTAGAGGAAATTAATCTACAGCGCCCACATGTTCTATCAGCAGAG
GAAGAAGCACTGCTTGCTCAGGCCTCTGAGGTGTTCAGTGCTGCGAGCAATACGTTTGGTATGTTGAACAATGCAGACCT
GGAGTTTCCAAGCATTAAAGATGAAAACGGAGAAGAAGTTGACATCACACATGGCCGTTTCATCCGTTTCCTGGAAAGCA
GTGATCGGCGTGTCCGGGAAGAAGCGTTCAAGAAAGTATATGAAACATACGGGAAATTCGAAAATACCTTTGCCTCTACA
TTAAGTGGAGCAGTGAAGAAAGATAACTTTGTGGCAAACGTAAGACATTATGATTCAGCAAGACATGCAGCATTATCAAA
TAACAATATTCCTGAACAGGTGTATGATAATCTTGTTGATACTGTCAATAAAAACCTTCATTTGCTGCAGCGGTATGTGA
AGCTTCGTAAAAAAGTATTAGGTTTGGATGAAGTTCACATGTATGACTTATATACGCCTCTTGTGAAAGAAGTCAAGATG
GACATCAGCTATGATGAAGCACAGGATATGATTCTTGACGGCTTAAAGCCTTTGGGTGATGAATATGCCAATGTCCTGAA
AGAAGGCTTTGACAATCGTTGGGTGGACGTAGTCGAGAACAAAGGAAAGAGAAGCGGGGCATATTCTTCAGGAGCATACG
GAACAAATCCGTATATCCTTATGAACTGGCAGGATAATGTGAATAATCTATTTACACTTGCTCATGAGTTCGGTCATAGT
GTGCACAGCTATTATACGCGGAAAGCCCAGCCTTACACCTATGGTCATTACTCCATCTTTGTTGCTGAAGTGGCCTCTAC
GTGTAATGAAGCACTATTGAATGATTATCTATTAAACACAATTGATGATGAGAAAAAGCGACTGTACCTCCTAAATCATT
ATTTAGAAGGATTCAGGGGAACCGTTTTCCGTCAAACCATGTTTGCAGAGTTTGAACACCTCATTCATAAGAAAGCCCAA
GAAGGAGAAGCTCTTACATCTGAATTCTTGACGAAAGAATATTATGAATTGAATAAGAAATATTTCGGAGAAGACATTTC
GATCGATGAAGAGATCGGATTGGAATGGGCTCGAATACCTCACTTCTACTACAATTACTATGTTTATCAATATGCGACTG
GATTCTCTGCAGCGACAGCTCTCAGTCAGCAAATTCTTGAAGAAGGAGAGCCGGCGGTGAAACGCTACATCGACTTCCTC
AAAGCTGGAAGCTCTGACTACCCGATTGAAGTCCTGAAAAAAGCAGGGGTGGACATGACAACCTCCAAGCCGGTTGAAGA
CGCGTGCAAGGTCTTTGAAGAAAAGTTGAATGAAATGGAAGAACTGCTGGAGAAACTTCAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.422

97.694

0.493