Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAEM60_RS02980 Genome accession   NZ_CP145886
Coordinates   587381..588331 (+) Length   316 a.a.
NCBI ID   WP_341357346.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582381..593331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS02965 (V2W31_02965) motA 583847..584638 (+) 792 WP_299741609.1 flagellar motor stator protein MotA -
  AAEM60_RS02970 (V2W31_02970) motB 584625..585416 (+) 792 WP_341357345.1 flagellar motor protein MotB -
  AAEM60_RS02975 (V2W31_02975) - 585752..587143 (+) 1392 WP_299741611.1 sodium:alanine symporter family protein -
  AAEM60_RS02980 (V2W31_02980) ceuB 587381..588331 (+) 951 WP_341357346.1 ABC transporter permease Machinery gene
  AAEM60_RS02985 (V2W31_02985) - 588324..589274 (+) 951 WP_341357347.1 iron chelate uptake ABC transporter family permease subunit -
  AAEM60_RS02990 (V2W31_02990) - 589271..590032 (+) 762 WP_299741617.1 ABC transporter ATP-binding protein -
  AAEM60_RS02995 (V2W31_02995) - 590051..591001 (+) 951 WP_299741618.1 siderophore ABC transporter substrate-binding protein -
  AAEM60_RS03000 (V2W31_03000) - 591003..591311 (+) 309 WP_341357348.1 antibiotic biosynthesis monooxygenase -
  AAEM60_RS03005 (V2W31_03005) - 591433..592527 (+) 1095 WP_341357349.1 carbohydrate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34827.22 Da        Isoelectric Point: 10.1633

>NTDB_id=940887 AAEM60_RS02980 WP_341357346.1 587381..588331(+) (ceuB) [Rossellomorea sp. y25]
MKQRYLFIALILLSLLSLFVGVSHITPMDLLQFQSEETQIFLISRFPRLLAILLAGAGMSIAGLIMQSLSRNKFVSPTTV
GTIDAARLGILVSMIVFVNASLLEKMIVAFAFALAGTLLFMQILDRIKFKDAVFIPLVGLMLGNVLSSVTTFFAYKANVI
QNMAAWLQGDFSLIMKGRYELLYISIPIMIIAYLYANRFTVAGMGEDFSKNLGVSYRRIVNTGLVLVALITVTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLVCDILGRIIIYPYEISISLMVGVIGSAIFLYLLVRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=940887 AAEM60_RS02980 WP_341357346.1 587381..588331(+) (ceuB) [Rossellomorea sp. y25]
ATGAAACAACGTTACCTTTTTATTGCGCTCATCTTGCTGTCACTCCTGTCTTTATTTGTAGGAGTGAGCCATATTACACC
GATGGATTTACTTCAATTTCAATCCGAAGAGACACAGATTTTTCTCATCAGTCGATTCCCCCGATTATTGGCGATCTTAC
TTGCCGGTGCGGGAATGAGCATTGCAGGGTTGATCATGCAAAGCTTGAGTCGAAACAAGTTCGTATCCCCTACGACGGTG
GGGACGATTGATGCTGCCCGGCTGGGGATCCTTGTATCGATGATTGTGTTTGTAAACGCCTCTTTACTTGAGAAGATGAT
TGTTGCTTTTGCATTTGCGTTAGCCGGCACATTGCTTTTTATGCAAATACTCGATCGGATCAAGTTCAAGGATGCAGTCT
TTATCCCCCTCGTCGGGTTGATGCTTGGGAATGTGTTGTCTTCGGTGACAACGTTTTTTGCCTACAAGGCAAATGTGATT
CAAAATATGGCGGCATGGCTGCAGGGTGATTTCTCATTGATCATGAAAGGCCGATATGAACTTTTGTACATAAGCATTCC
CATTATGATCATTGCCTATCTTTATGCGAATCGGTTTACTGTCGCCGGGATGGGGGAGGACTTCTCCAAGAACCTTGGTG
TTTCTTATCGCAGAATAGTGAATACTGGTCTCGTTCTGGTGGCCCTCATTACGGTGACAGTCGTATTGACTGTCGGGATG
ATCCCATTTCTGGGTTTGATCATACCCAATATCGTTTCCATCTTTAAAGGAGATCACTTACAGAAGACATTGCCTCATAC
GGCCTTACTTGGAGCGATCTTCCTTCTTGTCTGTGATATTTTAGGCCGGATTATCATCTACCCGTACGAAATTTCGATTA
GTTTAATGGTTGGGGTCATCGGCAGTGCCATCTTCCTATACTTGCTGGTAAGGAGGAAGGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.094

97.152

0.516