Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAEM60_RS00595 Genome accession   NZ_CP145886
Coordinates   115686..117062 (+) Length   458 a.a.
NCBI ID   WP_044340501.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110686..122062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS00580 (V2W31_00580) - 111002..111550 (+) 549 WP_299746067.1 UvrB/UvrC motif-containing protein -
  AAEM60_RS00585 (V2W31_00585) - 111547..112629 (+) 1083 WP_299746070.1 protein arginine kinase -
  AAEM60_RS00590 (V2W31_00590) clpC 112631..115078 (+) 2448 WP_299746073.1 ATP-dependent protease ATP-binding subunit ClpC -
  AAEM60_RS00595 (V2W31_00595) radA 115686..117062 (+) 1377 WP_044340501.1 DNA repair protein RadA Machinery gene
  AAEM60_RS00600 (V2W31_00600) disA 117066..118139 (+) 1074 WP_113970866.1 DNA integrity scanning diadenylate cyclase DisA -
  AAEM60_RS00605 (V2W31_00605) - 118354..119445 (+) 1092 WP_299746078.1 PIN/TRAM domain-containing protein -
  AAEM60_RS00610 (V2W31_00610) ispD 119522..120226 (+) 705 WP_299746080.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AAEM60_RS00615 (V2W31_00615) ispF 120219..120695 (+) 477 WP_299746083.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49956.41 Da        Isoelectric Point: 6.7664

>NTDB_id=940885 AAEM60_RS00595 WP_044340501.1 115686..117062(+) (radA) [Rossellomorea sp. y25]
MAKKKTKFVCSSCGYESAKWMGKCPGCNEWNTMVEEVEMTGKKPRGSFMHSENSGPTKAEKLISIETKQEPRVLTESKEL
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQLADQKQKVLYISGEESIKQTKLRADRLSIKSDDLYIFAETNLELIH
QTIEQISPDFVIIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHSYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALVTPTSF
NNPRRMATGIDHSRVSLIMAVLEKRAGMLLQQQDAYLKVAGGVKLDEPAIDLAVAASIASSFRDKASSAHDCIIGEVGLT
GEIRRVSRIEQRVQEAAKLGFRRVIIPQNNLSGWQPPSDIEVTGVSNINEALAIILGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=940885 AAEM60_RS00595 WP_044340501.1 115686..117062(+) (radA) [Rossellomorea sp. y25]
TTGGCAAAGAAAAAGACAAAGTTTGTATGTTCATCATGTGGTTATGAGTCTGCTAAATGGATGGGCAAATGTCCAGGTTG
TAACGAGTGGAACACGATGGTGGAAGAAGTTGAGATGACGGGGAAAAAGCCTCGAGGATCATTTATGCATTCTGAAAATA
GCGGGCCCACTAAAGCAGAAAAACTTATCTCAATCGAAACAAAGCAAGAACCAAGAGTATTGACTGAATCGAAAGAGCTG
AATCGGGTGTTAGGTGGAGGAGTAGTTCCGGGTTCACTTGTGTTGATCGGTGGAGATCCCGGGATCGGGAAATCTACTTT
ATTGCTTCAGGTATCTTCCCAGCTTGCCGATCAAAAGCAGAAGGTGCTATATATATCCGGAGAAGAATCGATCAAGCAAA
CAAAACTTCGGGCAGATCGATTAAGTATTAAGTCGGATGATTTATATATATTTGCGGAAACGAATCTTGAATTGATCCAT
CAAACGATTGAACAAATCTCTCCTGATTTTGTCATCATCGACTCGATTCAAACGATTTTTCATCCTGAAGTGACGTCTGC
TCCCGGTAGTGTTTCCCAGGTGAGGGAGTGTACAGCTGAATTAATGAGAATAGGAAAAACAAAAGGCATTGCCATCTTCA
TAGTAGGGCATGTTACAAAGGAAGGATCCATTGCCGGACCTCGTTTGCTGGAGCATATGGTAGATACCGTACTGTACTTT
GAAGGGGAGCGCCATCATTCATATCGTATTTTAAGAGCCGTGAAGAATCGCTTCGGTTCCACGAATGAGATGGGGATTTT
TGAAATGAAAGAGCTTGGTCTGGAGGAAGTCGCAAATCCTTCTGAGATATTCCTGGAGGAGCGCTCACAAGGCGCGGCAG
GCTCAACGGTCGTTGCATCCATGGAAGGTACAAGACCTGTTCTGGTGGAGATACAAGCCCTTGTCACCCCGACCAGCTTC
AATAACCCTAGACGAATGGCGACGGGGATCGATCATAGCCGTGTTTCACTCATTATGGCCGTGTTGGAGAAACGCGCAGG
AATGCTATTGCAGCAGCAGGATGCTTATTTAAAAGTGGCAGGAGGGGTCAAACTGGATGAACCTGCGATTGATTTGGCTG
TTGCCGCGAGTATTGCGTCCAGCTTCCGTGATAAAGCGTCCAGTGCTCATGATTGTATTATCGGAGAGGTCGGATTAACG
GGTGAAATAAGAAGGGTGTCAAGAATTGAGCAACGTGTTCAAGAAGCGGCTAAACTAGGCTTTAGACGTGTGATTATTCC
CCAAAATAACTTAAGTGGATGGCAGCCGCCTTCGGATATAGAGGTCACAGGAGTGTCAAATATAAACGAAGCGCTGGCTA
TTATTTTAGGAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.102

100

0.736
  radA Streptococcus mitis NCTC 12261

64.381

98.69

0.635
  radA Streptococcus mitis SK321

64.381

98.69

0.635
  radA Streptococcus pneumoniae Rx1

64.159

98.69

0.633
  radA Streptococcus pneumoniae D39

64.159

98.69

0.633
  radA Streptococcus pneumoniae R6

64.159

98.69

0.633
  radA Streptococcus pneumoniae TIGR4

64.159

98.69

0.633