Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ABUS34_RS17415 Genome accession   NZ_CP169801
Coordinates   3594134..3594697 (-) Length   187 a.a.
NCBI ID   WP_031961383.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv782     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3589134..3599697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS34_RS17380 - 3589240..3590274 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  ABUS34_RS17385 - 3590389..3591330 (+) 942 WP_104131029.1 triacylglycerol lipase -
  ABUS34_RS17390 rplS 3591384..3591752 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS34_RS17395 trmD 3591960..3592700 (-) 741 WP_031961379.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS34_RS17400 rimM 3592746..3593294 (-) 549 WP_031961380.1 ribosome maturation factor RimM -
  ABUS34_RS17405 rpsP 3593314..3593565 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS34_RS17410 pilE 3593712..3594134 (-) 423 WP_031961381.1 type IV pilin protein Machinery gene
  ABUS34_RS17415 comE 3594134..3594697 (-) 564 WP_031961383.1 type IV pilin protein Machinery gene
  ABUS34_RS17420 - 3594707..3598777 (-) 4071 WP_031961384.1 PilC/PilY family type IV pilus protein -
  ABUS34_RS17425 - 3598803..3599492 (-) 690 WP_079281925.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20604.52 Da        Isoelectric Point: 8.3938

>NTDB_id=940867 ABUS34_RS17415 WP_031961383.1 3594134..3594697(-) (comE) [Acinetobacter baumannii strain Hv782]
MLKQRAFTLLELMVTVVIIAILAAIAYPSYTRYIEKKDLAVAKQEAQRIATELERFKAKNFSYKGFDATYLYNAGTVTPY
NATTGTLLLPLDATSTTAKYTLTLLDGTQHLPLSILKGSDGNETADSAKVQGLNWVIIVERAKNNSGEPKQANNYDLLIN
SDGFRCMTKVKNVVSGYTDCGSNSETW

Nucleotide


Download         Length: 564 bp        

>NTDB_id=940867 ABUS34_RS17415 WP_031961383.1 3594134..3594697(-) (comE) [Acinetobacter baumannii strain Hv782]
ATGTTGAAACAACGAGCTTTTACCCTGCTTGAGTTGATGGTCACTGTGGTGATTATTGCGATTTTAGCTGCTATCGCGTA
TCCAAGTTATACGCGATACATTGAAAAAAAAGATCTAGCCGTAGCAAAACAAGAGGCTCAGCGTATTGCTACGGAGTTAG
AGCGTTTTAAAGCTAAAAACTTTAGCTATAAAGGTTTTGATGCGACTTACCTTTATAATGCTGGAACGGTTACTCCTTAT
AATGCAACCACTGGTACTTTATTGTTGCCACTAGATGCTACGTCAACAACTGCCAAGTACACATTGACTCTATTAGATGG
CACTCAACATTTACCTTTATCTATTTTAAAGGGCTCTGATGGTAACGAGACAGCAGATTCTGCGAAAGTCCAAGGTTTAA
ACTGGGTTATTATTGTTGAAAGGGCTAAGAATAATAGTGGTGAACCTAAGCAAGCTAATAACTATGATTTACTTATAAAC
AGCGATGGTTTTCGTTGTATGACAAAAGTTAAAAATGTAGTCAGTGGATATACTGACTGTGGTAGCAATAGTGAGACATG
GTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

43.85

100

0.439