Detailed information NTG0940812

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V6U69_RS09745
• Genome accession: NZ_CP145867
• Coordinates: 2098582..2101032 (-)
• Length: 816 a.a.
• NCBI ID: WP_410533795.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS10
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 2093582..2106032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U69_RS09735 (V6U69_09725)	pbp3	2095804..2097051 (+)	1248	WP_410533793.1	D-alanyl-D-alanine carboxypeptidase PBP3	-
V6U69_RS09740 (V6U69_09730)	pbp3	2097196..2098452 (+)	1257	WP_145517282.1	D-alanyl-D-alanine carboxypeptidase PBP3	-
V6U69_RS09745 (V6U69_09735)	clpC	2098582..2101032 (-)	2451	WP_410533795.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
V6U69_RS09750 (V6U69_09740)	-	2101033..2101488 (-)	456	WP_002889615.1	CtsR family transcriptional regulator	-
V6U69_RS09755 (V6U69_09745)	-	2101787..2102257 (+)	471	WP_002889614.1	COG2426 family protein	-
V6U69_RS09760 (V6U69_09750)	tsf	2102364..2103404 (-)	1041	WP_002886343.1	translation elongation factor Ts	-
V6U69_RS09765 (V6U69_09755)	rpsB	2103515..2104282 (-)	768	WP_002886342.1	30S ribosomal protein S2	-
V6U69_RS09770 (V6U69_09760)	ahpC	2104554..2105114 (+)	561	WP_037599758.1	alkyl hydroperoxide reductase subunit C	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 90253.58 Da
• Isoelectric Point: 5.9166

>NTDB_id=940812 V6U69_RS09745 WP_410533795.1 2098582..2101032(-) (clpC) [Streptococcus salivarius strain KSS10]
MTTYSRKMQAIFHRAQLEAERFGSPFLETWHVLLAMVEVPGSVAYLTFTDFEDRIRAEEIETAAVLAMEKSPKDLSESDI
IDLRVQSHALEAMLQEAEGIAGVTGAVEVGSEHVLMAFLLHKDLMVCRLLEVAGFQYKDDSDKPRIIDLRRSLERYAGLS
KQDLKAIHDLRKPKKSKASGNFANMMQPPQSSTGELSDYTKDLTAVAESGALDPVIGREKEISRMIQVLSRKTKNNPVLV
GEAGVGKTALALGLAQRIASGEVPFELADMRILELDMMSVVAGTRFRGDFEERMNQIIDEIEADGKIILFIDELHTIIGS
GSGIDSTLDAANILKPALARGTLHMVGATTQAEYQKHIEKDAALSRRFAKITIEEPSVAEAIDILKGLRSSYEDYHRVTI
TDEAVETAVKAAHRYLTSKNLPDSAIDLLDEASATVQGRIKKEAKREITPLDEALLSGDMKSAVKQYKASQKAKLPKPAL
VDADQIMQTLSRLSGIPVEKMTQADSKRYLNLEAELHKRVIGQDEAVSAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVG
KTELAKALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNIL
LQVLDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGVQDISHNHQAMQSRIMEELKKAYRPEFVNRIDEKVV
FHSLEEEQLREIVKIMVKPLVSALAEKGIDLKFQPAALKHLAKDGYDVEMGARPLRRTIQTQVEDKLSELLLGGQVVSGQ
TLKIGCSKDKLTFTVV

Nucleotide

• Length: 2451 bp

>NTDB_id=940812 V6U69_RS09745 WP_410533795.1 2098582..2101032(-) (clpC) [Streptococcus salivarius strain KSS10]
ATGACGACATATTCAAGAAAAATGCAGGCCATTTTCCATCGTGCACAGCTTGAGGCAGAGCGTTTTGGAAGTCCTTTTCT
GGAGACTTGGCATGTGCTTCTGGCTATGGTTGAGGTTCCAGGATCTGTAGCCTACCTAACATTTACTGATTTTGAGGACC
GTATTCGTGCGGAAGAGATTGAGACAGCCGCTGTACTAGCGATGGAGAAAAGTCCAAAAGACTTGTCTGAATCAGATATT
ATCGATTTACGTGTACAGTCACATGCTTTAGAGGCTATGTTGCAAGAGGCAGAGGGAATTGCTGGTGTGACTGGTGCTGT
AGAGGTAGGGTCTGAACATGTATTGATGGCCTTTCTCCTTCATAAGGATTTGATGGTTTGTCGTCTCCTTGAAGTTGCTG
GTTTTCAATATAAGGATGACAGTGATAAGCCTCGCATTATCGATTTACGACGTTCTTTGGAGCGTTACGCAGGTCTTAGT
AAGCAAGACTTGAAGGCCATTCATGACCTTCGTAAGCCTAAAAAATCAAAGGCATCAGGAAATTTTGCTAATATGATGCA
GCCTCCCCAATCTTCTACTGGGGAACTGTCAGATTATACCAAGGACTTAACGGCTGTAGCCGAGTCAGGTGCTCTTGATC
CTGTTATTGGACGTGAGAAAGAAATTTCACGCATGATTCAGGTTTTGAGTCGTAAAACGAAGAATAACCCAGTTCTTGTT
GGTGAAGCAGGTGTTGGTAAGACGGCACTGGCGCTTGGCTTGGCACAGCGTATTGCTTCAGGCGAAGTACCTTTTGAGCT
GGCTGATATGCGTATCTTAGAGCTTGATATGATGAGTGTGGTTGCAGGAACACGTTTCCGTGGTGATTTCGAAGAACGTA
TGAATCAAATCATCGATGAGATTGAAGCTGATGGAAAAATCATTCTCTTTATTGACGAACTGCATACGATTATTGGTTCT
GGTTCAGGTATTGATAGTACCTTAGATGCGGCAAATATTTTGAAACCTGCTCTAGCTCGTGGAACCCTTCATATGGTTGG
AGCTACCACTCAAGCAGAGTATCAAAAGCATATTGAGAAAGATGCAGCTCTTTCTCGTCGTTTTGCTAAGATTACAATTG
AGGAGCCAAGTGTAGCTGAGGCGATTGATATTCTAAAAGGCCTACGTTCGTCTTATGAAGACTATCATCGTGTAACGATT
ACTGATGAAGCGGTTGAGACAGCGGTCAAGGCGGCGCATCGTTATTTGACGAGTAAAAACTTACCTGACTCTGCCATTGA
CCTTTTAGATGAAGCGAGTGCGACTGTTCAAGGTCGTATTAAAAAAGAAGCCAAACGTGAGATAACGCCTTTGGATGAAG
CGCTTCTATCTGGTGATATGAAGTCTGCTGTTAAACAATATAAGGCTAGCCAAAAAGCAAAATTACCAAAACCTGCCTTG
GTAGATGCGGATCAGATTATGCAAACCCTTAGTCGTCTATCAGGTATCCCTGTTGAGAAGATGACTCAGGCAGATAGCAA
GCGTTATTTGAATCTGGAAGCAGAGCTTCACAAACGTGTTATTGGCCAAGACGAAGCAGTTTCAGCGATTAGTCGTGCTA
TTCGTCGTAACCAGTCAGGTATTCGTACTGGAAAACGTCCGATTGGTTCCTTCATGTTCCTTGGGCCTACTGGTGTTGGT
AAGACAGAATTGGCCAAGGCATTGGCGGAAGTTCTCTTTGATGATGAGTCAGCTTTGCTTCGCTTTGACATGTCAGAATA
CATGGAAAAATTTGCGGCTAGCCGACTTAACGGTGCTCCTCCAGGTTATGTTGGATATGATGAGGGCGGTGAGTTAACAG
AAAAAGTTCGTAATAAGCCTTACTCAGTTCTTCTCTTTGACGAGGTGGAAAAGGCTCACCCAGATATTTTCAATATTCTC
TTACAGGTTTTGGATGACGGTGTCTTGACGGATAGTCGAGGTCGTAAAGTTGACTTCTCAAATACCATTATCATTATGAC
TTCGAACTTGGGAGCGACTGCTCTTCGTGATGATAAGACCGTTGGTTTTGGAGTCCAAGACATTTCTCATAATCACCAAG
CTATGCAGTCACGTATCATGGAAGAGCTTAAGAAGGCCTACCGACCAGAGTTTGTCAACCGTATTGATGAAAAGGTTGTC
TTCCATAGTTTAGAGGAAGAGCAGCTTCGTGAGATTGTCAAGATTATGGTAAAACCGTTGGTATCAGCTTTGGCTGAAAA
AGGGATTGACTTGAAGTTCCAACCAGCTGCCCTCAAGCATTTGGCTAAAGATGGCTATGATGTTGAGATGGGTGCTCGTC
CATTACGTCGTACGATTCAAACTCAAGTGGAGGACAAGTTATCTGAGCTCTTACTAGGTGGCCAAGTAGTTAGTGGACAA
ACTCTTAAAATCGGCTGCTCGAAAGATAAATTAACCTTTACAGTAGTGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (724-804)

• ATPase family associated with various cellular activities (AAA) (AAA) (238-370)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (109-135)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-46)

• AAA domain (Cdc48 subfamily) (AAA_2) (546-717)

• AAA lid domain (AAA_lid_9) (377-457)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus thermophilus LMG 18311	94.853	100	0.949
clpC	Streptococcus thermophilus LMD-9	94.73	100	0.947
clpC	Streptococcus mutans UA159	72.794	100	0.728
clpC	Streptococcus pneumoniae TIGR4	67.157	100	0.672
clpC	Streptococcus pneumoniae Rx1	67.157	100	0.672
clpC	Streptococcus pneumoniae D39	67.157	100	0.672
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	50.301	100	0.512
clpC	Bacillus subtilis subsp. subtilis str. 168	47.266	100	0.477
clpE	Streptococcus mutans UA159	47.604	76.716	0.365