Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V6U69_RS07990 Genome accession   NZ_CP145867
Coordinates   1749723..1751528 (-) Length   601 a.a.
NCBI ID   WP_060973367.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744723..1756528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS07970 (V6U69_07970) - 1745480..1745965 (-) 486 WP_002885497.1 LURP-one-related/scramblase family protein -
  V6U69_RS07975 (V6U69_07975) - 1746303..1747445 (-) 1143 WP_060973370.1 peptidyl-prolyl cis-trans isomerase -
  V6U69_RS07980 (V6U69_07980) - 1747507..1748214 (-) 708 WP_014633986.1 O-methyltransferase -
  V6U69_RS07985 (V6U69_07985) - 1748286..1749506 (-) 1221 WP_410533629.1 OFA family MFS transporter -
  V6U69_RS07990 (V6U69_07990) pepF 1749723..1751528 (-) 1806 WP_060973367.1 oligoendopeptidase F Regulator
  V6U69_RS07995 (V6U69_07995) - 1751539..1752498 (-) 960 WP_107373296.1 competence protein CoiA -
  V6U69_RS08000 (V6U69_08000) - 1753801..1755738 (-) 1938 WP_107372608.1 GbpC/Spa domain-containing protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69098.12 Da        Isoelectric Point: 4.5615

>NTDB_id=940797 V6U69_RS07990 WP_060973367.1 1749723..1751528(-) (pepF) [Streptococcus salivarius strain KSS10]
MSDNRTHLEEKYTWDLTTIFATDADWETEYESTVQDLRKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDDKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=940797 V6U69_RS07990 WP_060973367.1 1749723..1751528(-) (pepF) [Streptococcus salivarius strain KSS10]
ATGTCAGACAATCGTACTCATTTAGAAGAAAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACCGAATATGAAAGCACTGTTCAGGATTTGAGGAAGGCTAGTGCTTATGCAGGTCATCTCTTGGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGTCTGTATCAAGAGTACCAAGCAAAGGCCTCAAACCTTTATTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGATAAGAAATTAGCTGAATTTAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGTCTTTTGGCCAACAAGGATCACGTTCTTTCTCAAGAAGCGGAAGAACTCTTGGCAGCAGCC
GGTGATATTTTCAACGGTCCAACGGATACCTTTAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
CCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGTG
CTTATGAAGCGATGTACGGTACTTACGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTTAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCGGCTAATTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAATAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGGC
TTGACGAGCTTAAGATGTATGACGTCTACACACCACTTTCTGAGACTGAGACTGCTCTTACTTATGAAGAGTCTCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGCTCAGGTGCCTACTCAGGTGGTGCCTATGATACAAATGCTTTCATGCTTTTGAACT
GGCAAGACACTCTGGACAATCTCTTTACCTTGGTTCACGAGACCGGCCACAGCTTGCATTCAACGTTCACACGTCAGACA
CAACCATATGTTTATGGAGATTACCCAATCTTCTTGGCAGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAAGTTAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAGCATGCTATCCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCCGACTTC
ATGAATAAACTTTACGCAGACCTCAATGAGAAATATTATAACCTTAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCAGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCACGGTACTGAGGAGGATAAAGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGATTATCCTTTG
GAAGTTATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.667

100

0.997