Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V6U68_RS02160 Genome accession   NZ_CP145866
Coordinates   414927..416732 (+) Length   601 a.a.
NCBI ID   WP_037599540.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 409927..421732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS02150 (V6U68_02145) - 410717..412654 (+) 1938 WP_064520602.1 GbpC/Spa domain-containing protein -
  V6U68_RS02155 (V6U68_02150) - 413957..414916 (+) 960 WP_410531817.1 competence protein CoiA -
  V6U68_RS02160 (V6U68_02155) pepF 414927..416732 (+) 1806 WP_037599540.1 oligoendopeptidase F Regulator
  V6U68_RS02165 (V6U68_02160) - 416949..418169 (+) 1221 WP_410531818.1 OFA family MFS transporter -
  V6U68_RS02170 (V6U68_02165) - 418241..418948 (+) 708 WP_410531819.1 O-methyltransferase -
  V6U68_RS02175 (V6U68_02170) - 419010..420152 (+) 1143 WP_198463436.1 peptidyl-prolyl cis-trans isomerase -
  V6U68_RS02180 (V6U68_02175) - 420221..420358 (+) 138 WP_157747910.1 hypothetical protein -
  V6U68_RS02185 (V6U68_02180) - 420490..420975 (+) 486 WP_339157062.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69040.08 Da        Isoelectric Point: 4.5615

>NTDB_id=940703 V6U68_RS02160 WP_037599540.1 414927..416732(+) (pepF) [Streptococcus salivarius strain KSS9]
MSDNRAHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDDKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=940703 V6U68_RS02160 WP_037599540.1 414927..416732(+) (pepF) [Streptococcus salivarius strain KSS9]
ATGTCAGACAATCGTGCTCATTTAGAAGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACTGAGTATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTCTTAGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGGCTTTACCAAGAGTACCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
ATACTTTGAGCCTGAATTTATGGCCTTGGATGATAAGAAATTAGCTGAGTTTAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGCCTTTTGGCAAACAAGGACCACGTTCTTTCTCAAGAAGCTGAGGAGCTCTTGGCAGCAGCA
GGTGATATCTTCAACGGTCCAACGGATACCTTCAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
TCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTATGGGACCTACGAGCAGTTCCAACATACTTATGCACAAACACTCCAAGGCGTTGTCAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCAGCTAACTTTATTCCAGAAAGTGTTTA
TGATTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCATCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGGC
TTGACGAGCTTAAGATGTATGATGTCTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGTTCAGGTGCTTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGATACTTTGGACAATCTCTTTACCTTGGTTCACGAGACTGGTCATAGTTTGCATTCAACGTTCACACGTCAGACT
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCGGAAATTGCGTCTACAACCAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAGGTCAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACACAATTTGCAGAGTTTGAACATGCTATCCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCCGACTTC
ATGAATAAGCTTTACGCAGATCTCAATGAGAAATACTATAATCTCAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCGGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCATGGTACTGAAGAAGATAAGGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGATTATCCTTTG
GAAGTTATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.667

100

0.997