Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V6U67_RS09310 Genome accession   NZ_CP145865
Coordinates   2018773..2019483 (+) Length   236 a.a.
NCBI ID   WP_175061547.1    Uniprot ID   A0AB35ITA6
Organism   Streptococcus salivarius strain KSS8     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2013773..2024483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS09295 (V6U67_09300) treC 2015027..2016652 (-) 1626 WP_272126574.1 alpha,alpha-phosphotrehalase -
  V6U67_RS09300 - 2016707..2017195 (-) 489 WP_371734210.1 PTS glucose transporter subunit IIA -
  V6U67_RS09305 (V6U67_09305) treP 2017235..2018656 (-) 1422 Protein_1776 PTS system trehalose-specific EIIBC component -
  V6U67_RS09310 (V6U67_09310) treR 2018773..2019483 (+) 711 WP_175061547.1 trehalose operon repressor Regulator
  V6U67_RS09315 (V6U67_09315) - 2019537..2020097 (-) 561 WP_021144703.1 TIGR01440 family protein -
  V6U67_RS09320 (V6U67_09320) - 2020113..2020451 (-) 339 WP_084869214.1 hypothetical protein -
  V6U67_RS09325 (V6U67_09325) - 2020484..2020840 (-) 357 WP_002885732.1 hypothetical protein -
  V6U67_RS09330 (V6U67_09330) - 2021142..2022023 (-) 882 WP_038676880.1 class II fructose-bisphosphate aldolase -
  V6U67_RS09340 (V6U67_09340) - 2022445..2023740 (-) 1296 WP_038676882.1 glutamyl-tRNA synthetase -
  V6U67_RS09345 (V6U67_09345) rplQ 2023990..2024376 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27341.97 Da        Isoelectric Point: 6.8431

>NTDB_id=940679 V6U67_RS09310 WP_175061547.1 2018773..2019483(+) (treR) [Streptococcus salivarius strain KSS8]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALSLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQINLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=940679 V6U67_RS09310 WP_175061547.1 2018773..2019483(+) (treR) [Streptococcus salivarius strain KSS8]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTAGAGATACTATACGAAAGGCATTAAGCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGCTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGATGCAAGCCTTGTTCCTCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGATCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602