Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V6U67_RS09005 Genome accession   NZ_CP145865
Coordinates   1956512..1957873 (-) Length   453 a.a.
NCBI ID   WP_080562498.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1951512..1962873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS08980 (V6U67_08985) rplA 1953248..1953937 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  V6U67_RS08985 (V6U67_08990) rplK 1954037..1954462 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V6U67_RS08990 (V6U67_08995) - 1954634..1954987 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  V6U67_RS08995 (V6U67_09000) - 1955083..1955580 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  V6U67_RS09000 (V6U67_09005) - 1955731..1956426 (-) 696 WP_002885783.1 TIGR00266 family protein -
  V6U67_RS09005 (V6U67_09010) radA 1956512..1957873 (-) 1362 WP_080562498.1 DNA repair protein RadA Machinery gene
  V6U67_RS09010 (V6U67_09015) - 1957870..1958337 (-) 468 WP_272126610.1 isochorismatase family protein -
  V6U67_RS09015 (V6U67_09020) - 1958348..1958794 (-) 447 WP_084870150.1 dUTP diphosphatase -
  V6U67_RS09020 (V6U67_09025) - 1959003..1959605 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  V6U67_RS09025 (V6U67_09030) - 1959624..1960874 (+) 1251 WP_002885631.1 NAD(P)H-dependent oxidoreductase -
  V6U67_RS09030 (V6U67_09035) - 1960991..1961782 (+) 792 WP_002885797.1 formate/nitrite transporter family protein -
  V6U67_RS09035 (V6U67_09040) - 1961791..1962351 (+) 561 WP_037611116.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49477.89 Da        Isoelectric Point: 6.9531

>NTDB_id=940670 V6U67_RS09005 WP_080562498.1 1956512..1957873(-) (radA) [Streptococcus salivarius strain KSS8]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIRVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=940670 V6U67_RS09005 WP_080562498.1 1956512..1957873(-) (radA) [Streptococcus salivarius strain KSS8]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGACGTTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAAGTTGAGGTGCAGGAGGTAAAAAATGCTCGTGTCAGTTTAACGGGTGAAAAGT
CTAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGAAAATCAACTCTCCTCTTACA
GGTGTCAACACAGTTAGCTAACAAGGGAACTGTCCTCTATGTATCTGGGGAAGAATCTGCCGAGCAGATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTCATGCAGATTGCTAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGAGAACGT
CATCATACCTTCCGTATTTTGCGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTACTAAATCCTAGCCAAGTTTTCTTAGAGGAACGTCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
AGGACGACAACGGGACTGGATTTTAATCGCGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCTGGAGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTCGCTGTTGCCA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTTATAGGAGAAATTGGCTTGACTGGAGAGATTCGC
CGAGTGACTCGTATTGAACAGCGTATTAATGAAGCTGCTAAACTAGGTTTTACTAAGATTTATGCTCCGAAGAATTCTCT
TCATGGTATGAAAATTCCAGAAGGTATCCGGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614