Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   V6U67_RS08065 Genome accession   NZ_CP145865
Coordinates   1771103..1772179 (-) Length   358 a.a.
NCBI ID   WP_073687320.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1766103..1777179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS08040 (V6U67_08050) - 1766844..1767164 (+) 321 WP_022495911.1 hypothetical protein -
  V6U67_RS08045 (V6U67_08055) - 1767214..1769280 (-) 2067 Protein_1544 cation:proton antiporter -
  V6U67_RS08050 (V6U67_08060) - 1769289..1769531 (-) 243 WP_245085259.1 hypothetical protein -
  V6U67_RS08055 (V6U67_08065) - 1769528..1770076 (-) 549 WP_245085262.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  V6U67_RS08060 (V6U67_08070) - 1770073..1771017 (-) 945 WP_022495907.1 TIGR01212 family radical SAM protein -
  V6U67_RS08065 (V6U67_08075) sepM 1771103..1772179 (-) 1077 WP_073687320.1 SepM family pheromone-processing serine protease Regulator
  V6U67_RS08070 (V6U67_08080) coaD 1772157..1772654 (-) 498 WP_175057757.1 pantetheine-phosphate adenylyltransferase -
  V6U67_RS08075 (V6U67_08085) rsmD 1772687..1773235 (-) 549 WP_231910681.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V6U67_RS08080 (V6U67_08090) trxB 1773376..1774296 (-) 921 WP_002884706.1 thioredoxin-disulfide reductase -
  V6U67_RS08085 (V6U67_08095) - 1774362..1774586 (-) 225 WP_022495904.1 DUF4059 family protein -
  V6U67_RS08090 (V6U67_08100) - 1774799..1775542 (-) 744 WP_022495903.1 amino acid ABC transporter ATP-binding protein -
  V6U67_RS08095 (V6U67_08105) - 1775542..1776288 (-) 747 WP_118189357.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 38988.67 Da        Isoelectric Point: 9.2472

>NTDB_id=940666 V6U67_RS08065 WP_073687320.1 1771103..1772179(-) (sepM) [Streptococcus salivarius strain KSS8]
MANKNESKSLLGKLWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVDKKADDSKGSYNFVAVAQTKAT
LALMLYAQLNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAIYQGLTLAGKEASLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGKTFDNSADLIKYVQGLKLGSKVKVTYTTDDKEKTATGKIIKIANGKNGIGIGLTDHTEVKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGSVGDIGGAYLKVKSAADSGADIFFVPNNPVTKEMKKADPD
AKTNYQEAKEAAKKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=940666 V6U67_RS08065 WP_073687320.1 1771103..1772179(-) (sepM) [Streptococcus salivarius strain KSS8]
GTGGCAAACAAGAACGAATCTAAATCACTATTAGGGAAACTTTGGCGGATTAAGTGGTGGTTGTTAAGTATTTTTACGGT
ACTTTTCCTCCTATTTGCCCTCTTTTTCCCGCTAAATAATTATTATGTTGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACTGTAGACAAGAAAGCTGATGATTCAAAAGGATCCTACAATTTTGTGGCGGTGGCTCAAACCAAGGCTACA
TTGGCCCTCATGCTCTATGCTCAGCTTAATGATTTTGCAAAGCTTCAAACAGCTGAAGAGGCAACTGGAAATTACTCTGA
TGAAGATTTCATGCGTATCAACCAATTTTACATGGAGACTTCCCAAAACCAAGCGATTTATCAGGGCTTGACTCTGGCCG
GTAAGGAGGCTAGCTTGGAGTATATGGGTGTTTATGTGCTTCAGGTGGCTGATGATTCTAGCTTCAAGGGTGTCCTTAAT
ATTGCGGATACGGTGACAGCTGTCAATGGCAAGACTTTTGATAACTCTGCTGATTTGATAAAATACGTTCAAGGTCTTAA
GCTGGGTTCAAAAGTCAAGGTCACTTATACGACAGATGACAAAGAAAAGACTGCTACTGGTAAGATTATCAAGATTGCCA
ATGGTAAAAATGGTATTGGTATCGGTTTGACAGATCATACTGAGGTCAAGAGTCCTGAGAATGTGAAGTTTAAACTTGAT
GGTGTTGGCGGACCAAGTGCGGGTCTTATGTTTACCCTAGCTATTTACGATCAGGTATCTGGTCAAGATCTTAAGGCTGG
CCGTAAGATAGCTGGAACAGGAACCATTGAAAAGGATGGTTCTGTCGGTGATATCGGTGGTGCCTACCTCAAGGTGAAAT
CAGCGGCTGATAGTGGTGCAGACATTTTCTTCGTGCCAAATAATCCAGTAACCAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAACTATCAAGAGGCCAAGGAAGCTGCCAAGAAACTGGGAACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATAA

Domains


Predicted by InterproScan.

(142-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

65.396

95.251

0.623