Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V6U66_RS10045 Genome accession   NZ_CP145864
Coordinates   2145830..2146540 (+) Length   236 a.a.
NCBI ID   WP_049527744.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2140830..2151540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS10035 (V6U66_10015) treC 2142014..2143639 (-) 1626 WP_002887038.1 alpha,alpha-phosphotrehalase -
  V6U66_RS10040 (V6U66_10020) treP 2143694..2145673 (-) 1980 WP_049527746.1 PTS system trehalose-specific EIIBC component -
  V6U66_RS10045 (V6U66_10025) treR 2145830..2146540 (+) 711 WP_049527744.1 trehalose operon repressor Regulator
  V6U66_RS10050 (V6U66_10030) - 2146594..2147154 (-) 561 WP_049527743.1 TIGR01440 family protein -
  V6U66_RS10055 (V6U66_10035) - 2147170..2147508 (-) 339 WP_014635137.1 hypothetical protein -
  V6U66_RS10060 (V6U66_10040) - 2147541..2147897 (-) 357 WP_049527740.1 hypothetical protein -
  V6U66_RS10065 (V6U66_10045) - 2148063..2148944 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  V6U66_RS10070 (V6U66_10050) - 2149068..2150054 (-) 987 WP_410534420.1 IS30 family transposase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27311.94 Da        Isoelectric Point: 6.6089

>NTDB_id=940613 V6U66_RS10045 WP_049527744.1 2145830..2146540(+) (treR) [Streptococcus salivarius strain KSS7]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSQQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIF
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=940613 V6U66_RS10045 WP_049527744.1 2145830..2146540(+) (treR) [Streptococcus salivarius strain KSS7]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTATCAGGTTAGTCGAGACACTATACGAAAGGCGTTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGCTCCCAGGTTATTAACCAAGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATCGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCAACAGGTTTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGATGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTTC
GACTACATAGAGAATCAACTCAACCTTAGCATCTCCCACGCCTTTAAAGAAATCACTATCGATAACGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCATAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602