Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V6U65_RS02170 Genome accession   NZ_CP145863
Coordinates   415874..417679 (+) Length   601 a.a.
NCBI ID   WP_410532640.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 410874..422679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS02160 (V6U65_02160) - 412256..413505 (-) 1250 Protein_377 ISL3 family transposase -
  V6U65_RS02165 (V6U65_02165) - 414904..415863 (+) 960 WP_410532638.1 competence protein CoiA -
  V6U65_RS02170 (V6U65_02170) pepF 415874..417679 (+) 1806 WP_410532640.1 oligoendopeptidase F Regulator
  V6U65_RS02175 (V6U65_02175) - 417891..419111 (+) 1221 WP_048790172.1 OFA family MFS transporter -
  V6U65_RS02180 (V6U65_02180) - 419183..419890 (+) 708 WP_014633986.1 O-methyltransferase -
  V6U65_RS02185 (V6U65_02185) - 419952..421094 (+) 1143 WP_410532642.1 peptidyl-prolyl cis-trans isomerase -
  V6U65_RS02190 (V6U65_02190) - 421163..421300 (+) 138 WP_153300621.1 hypothetical protein -
  V6U65_RS02195 (V6U65_02195) - 421433..421918 (+) 486 WP_227039501.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69027.04 Da        Isoelectric Point: 4.5634

>NTDB_id=940500 V6U65_RS02170 WP_410532640.1 415874..417679(+) (pepF) [Streptococcus salivarius strain KSS6]
MSDNRAHLEEKYTWDLTTIFATDADWENEYESTVQDLKKAGAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDDKKLAEFKEQESGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSEYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=940500 V6U65_RS02170 WP_410532640.1 415874..417679(+) (pepF) [Streptococcus salivarius strain KSS6]
ATGTCAGACAATCGCGCTCATTTAGAAGAGAAATATACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GAATGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTGGTGCTTATGCAGGGCATCTCTTGGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACGGTAGGTCTTTATCAAGAGTACCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGATAAGAAATTAGCTGAGTTCAAAGAACAAGAGTCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGCCTTTTGGCGAACAAGGACCACGTTCTTTCCCAAGAAGCAGAAGAGCTCTTGGCAGCAGCC
GGTGATATTTTCAACGGTCCAACGGATACCTTCAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
CCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGTG
CTTATGAAGCGATGTACGGTACTTACGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTTAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCGGCTAACTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGAC
TTGATGAGCTTAAGATGTATGACGTCTACACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGCTCAGGTGCCTACTCAGGTGGTGCCTATGATACAAATGCTTTCATGCTTTTGAACT
GGCAAGACACTCTGGACAATCTCTTTACCTTGGTTCACGAGACCGGCCACAGCTTGCATTCAACGTTCACACGTCAGACA
CAACCATATGTTTATGGAGATTACCCAATCTTCTTGGCGGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
ACTTCTTAAAGAAGTTAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAGCATGCTATCCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCCGACTTC
ATGAATAAACTTTACGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCAGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCACGGTACTGAGGAGGATAAAGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGAATATCCTTTG
GAAGTTATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCAGCTTTTAAAGTCTTTGAAGACCGTCT
CGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.002

100

0.99