Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ABUS03_RS17790 Genome accession   NZ_CP169782
Coordinates   3646040..3646603 (-) Length   187 a.a.
NCBI ID   WP_031961383.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv640     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3641040..3651603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS03_RS17755 - 3641146..3642180 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  ABUS03_RS17760 - 3642295..3643236 (+) 942 WP_104131029.1 triacylglycerol lipase -
  ABUS03_RS17765 rplS 3643290..3643658 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS03_RS17770 trmD 3643866..3644606 (-) 741 WP_031961379.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS03_RS17775 rimM 3644652..3645200 (-) 549 WP_031961380.1 ribosome maturation factor RimM -
  ABUS03_RS17780 rpsP 3645220..3645471 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS03_RS17785 pilE 3645618..3646040 (-) 423 WP_031961381.1 type IV pilin protein Machinery gene
  ABUS03_RS17790 comE 3646040..3646603 (-) 564 WP_031961383.1 type IV pilin protein Machinery gene
  ABUS03_RS17795 - 3646613..3650683 (-) 4071 WP_031961384.1 PilC/PilY family type IV pilus protein -
  ABUS03_RS17800 - 3650709..3651405 (-) 697 Protein_3475 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20604.52 Da        Isoelectric Point: 8.3938

>NTDB_id=940426 ABUS03_RS17790 WP_031961383.1 3646040..3646603(-) (comE) [Acinetobacter baumannii strain Hv640]
MLKQRAFTLLELMVTVVIIAILAAIAYPSYTRYIEKKDLAVAKQEAQRIATELERFKAKNFSYKGFDATYLYNAGTVTPY
NATTGTLLLPLDATSTTAKYTLTLLDGTQHLPLSILKGSDGNETADSAKVQGLNWVIIVERAKNNSGEPKQANNYDLLIN
SDGFRCMTKVKNVVSGYTDCGSNSETW

Nucleotide


Download         Length: 564 bp        

>NTDB_id=940426 ABUS03_RS17790 WP_031961383.1 3646040..3646603(-) (comE) [Acinetobacter baumannii strain Hv640]
ATGTTGAAACAACGAGCTTTTACCCTGCTTGAGTTGATGGTCACTGTGGTGATTATTGCGATTTTAGCTGCTATCGCGTA
TCCAAGTTATACGCGATACATTGAAAAAAAAGATCTAGCCGTAGCAAAACAAGAGGCTCAGCGTATTGCTACGGAGTTAG
AGCGTTTTAAAGCTAAAAACTTTAGCTATAAAGGTTTTGATGCGACTTACCTTTATAATGCTGGAACGGTTACTCCTTAT
AATGCAACCACTGGTACTTTATTGTTGCCACTAGATGCTACGTCAACAACTGCCAAGTACACATTGACTCTATTAGATGG
CACTCAACATTTACCTTTATCTATTTTAAAGGGCTCTGATGGTAACGAGACAGCAGATTCTGCGAAAGTCCAAGGTTTAA
ACTGGGTTATTATTGTTGAAAGGGCTAAGAATAATAGTGGTGAACCTAAGCAAGCTAATAACTATGATTTACTTATAAAC
AGCGATGGTTTTCGTTGTATGACAAAAGTTAAAAATGTAGTCAGTGGATATACTGACTGTGGTAGCAATAGTGAGACATG
GTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

43.85

100

0.439