Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V6U64_RS00695 Genome accession   NZ_CP145862
Coordinates   119820..120530 (-) Length   236 a.a.
NCBI ID   WP_022496083.1    Uniprot ID   A0AB33ZGA7
Organism   Streptococcus salivarius strain KSS4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 114820..125530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS00665 (V6U64_00665) - 115784..115906 (+) 123 WP_021144707.1 hypothetical protein -
  V6U64_RS00670 (V6U64_00670) - 116083..116964 (+) 882 WP_021144706.1 hypothetical protein -
  V6U64_RS00675 (V6U64_00675) - 117098..117901 (+) 804 WP_021144705.1 FxLYD domain-containing protein -
  V6U64_RS00680 (V6U64_00680) - 118463..118819 (+) 357 WP_002885732.1 hypothetical protein -
  V6U64_RS00685 (V6U64_00685) - 118852..119190 (+) 339 WP_014635137.1 hypothetical protein -
  V6U64_RS00690 (V6U64_00690) - 119206..119766 (+) 561 WP_022496082.1 TIGR01440 family protein -
  V6U64_RS00695 (V6U64_00695) treR 119820..120530 (-) 711 WP_022496083.1 trehalose operon repressor Regulator
  V6U64_RS00700 (V6U64_00700) treP 120687..122648 (+) 1962 WP_410536711.1 PTS system trehalose-specific EIIBC component -
  V6U64_RS00705 (V6U64_00705) treC 122712..124337 (+) 1626 WP_038676878.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27352.00 Da        Isoelectric Point: 6.8431

>NTDB_id=940416 V6U64_RS00695 WP_022496083.1 119820..120530(-) (treR) [Streptococcus salivarius strain KSS4]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQSLNSQTNVISLDKIIVDSKLSERTGLSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=940416 V6U64_RS00695 WP_022496083.1 119820..120530(-) (treR) [Streptococcus salivarius strain KSS4]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAATTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAGGCGTTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAAGCCTTAATTCGCAAACCAATGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAAACTCTCAGAAAGAACTGGTCTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGCG
CCTCTGTTATAGATATTGATTACCTAGATGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTTGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTCGTTGATTATGCCAAGCGCCACCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602