Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   V6U63_RS10040 Genome accession   NZ_CP145861
Coordinates   2144858..2145625 (+) Length   255 a.a.
NCBI ID   WP_195187629.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139858..2150625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS10025 (V6U63_10005) - 2142173..2142856 (-) 684 WP_013991345.1 YoaK family protein -
  V6U63_RS10030 (V6U63_10010) rlmH 2142872..2143351 (-) 480 WP_014632473.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  V6U63_RS10035 (V6U63_10015) htrA 2143557..2144792 (+) 1236 WP_048676433.1 S1C family serine protease Regulator
  V6U63_RS10040 (V6U63_10020) spo0J 2144858..2145625 (+) 768 WP_195187629.1 ParB/RepB/Spo0J family partition protein Regulator
  V6U63_RS10045 (V6U63_10025) dnaA 2145863..2147227 (+) 1365 WP_048676427.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29436.86 Da        Isoelectric Point: 9.4081

>NTDB_id=940412 V6U63_RS10040 WP_195187629.1 2144858..2145625(+) (spo0J) [Streptococcus salivarius strain KSS3]
MQEQLKALPISDIYPNPFQPRIEFSDEELAELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRSLINELAYNHEELAKAMGKSRPYISNSLRLLQLPQEIQTSIENGKLSQG
HARALLAIEDTKKQLTIYHQVLTEKWSVRTLEKRLQELPKKQKSKKDIHIKDKEKELEKSLGLPVTLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=940412 V6U63_RS10040 WP_195187629.1 2144858..2145625(+) (spo0J) [Streptococcus salivarius strain KSS3]
ATGCAAGAACAACTCAAAGCTCTACCTATTAGTGACATCTATCCCAATCCTTTTCAACCTCGTATAGAGTTCTCTGATGA
AGAATTAGCAGAGCTAAGCCAATCAATCTCAGAAAATGGACTGATACAGCCAATCATTGTCCGAAAATCGGATATTATTG
GTTATGAACTAATTGCTGGGGAAAGACGTTTACGTGCCTGTAAACGTCTAGGAATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAAAGCCGTAAACAAGCTATTATTGAAAATTTACAACGATCGAATCTCAATCCCATTGAAGAAGC
AAAGGCCTATCGTAGTTTAATTAATGAGCTAGCTTATAATCACGAGGAACTGGCGAAAGCTATGGGAAAATCCAGACCCT
ATATCAGTAACTCTCTCAGACTCCTCCAACTTCCCCAAGAGATACAGACGAGTATCGAAAATGGCAAATTGAGTCAAGGA
CATGCTAGAGCACTTTTAGCTATTGAGGATACAAAAAAGCAATTAACTATCTATCATCAGGTCCTTACTGAAAAATGGTC
AGTTCGTACCCTGGAAAAAAGACTTCAAGAACTTCCAAAAAAACAAAAATCAAAAAAAGATATTCATATAAAAGATAAAG
AAAAAGAACTTGAAAAATCACTTGGTCTCCCTGTTACTCTTCGTTATCACAAAAACCACTCTGGAACTATTCAGATCCAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATTTGA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(146-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

58.431

100

0.584