Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V6U63_RS09400 Genome accession   NZ_CP145861
Coordinates   2033762..2034472 (+) Length   236 a.a.
NCBI ID   WP_175061547.1    Uniprot ID   A0AB35ITA6
Organism   Streptococcus salivarius strain KSS3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2028762..2039472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS09385 (V6U63_09370) treC 2030016..2031641 (-) 1626 WP_195914741.1 alpha,alpha-phosphotrehalase -
  V6U63_RS09390 - 2031696..2032184 (-) 489 WP_371734210.1 PTS glucose transporter subunit IIA -
  V6U63_RS09395 (V6U63_09375) treP 2032224..2033645 (-) 1422 Protein_1794 PTS system trehalose-specific EIIBC component -
  V6U63_RS09400 (V6U63_09380) treR 2033762..2034472 (+) 711 WP_175061547.1 trehalose operon repressor Regulator
  V6U63_RS09405 (V6U63_09385) - 2034526..2035086 (-) 561 WP_003092046.1 TIGR01440 family protein -
  V6U63_RS09410 (V6U63_09390) - 2035102..2035440 (-) 339 WP_155164814.1 hypothetical protein -
  V6U63_RS09415 (V6U63_09395) - 2035473..2035829 (-) 357 WP_410535076.1 hypothetical protein -
  V6U63_RS09420 (V6U63_09400) - 2036131..2037012 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  V6U63_RS09430 (V6U63_09410) - 2037436..2038731 (-) 1296 WP_410535078.1 gamma-glutamylcysteine synthetase -
  V6U63_RS09435 (V6U63_09415) rplQ 2038982..2039368 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27341.97 Da        Isoelectric Point: 6.8431

>NTDB_id=940409 V6U63_RS09400 WP_175061547.1 2033762..2034472(+) (treR) [Streptococcus salivarius strain KSS3]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALSLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQINLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=940409 V6U63_RS09400 WP_175061547.1 2033762..2034472(+) (treR) [Streptococcus salivarius strain KSS3]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTAGAGATACTATACGAAAGGCATTAAGCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGCTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGATGCAAGCCTTGTTCCTCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGATCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602