Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABUS03_RS09010 Genome accession   NZ_CP169782
Coordinates   1851256..1851891 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain Hv640     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1846256..1856891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS03_RS08985 - 1847096..1848109 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  ABUS03_RS08990 murU 1848109..1848798 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABUS03_RS08995 rsmG 1848886..1849518 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABUS03_RS09000 - 1849540..1850322 (+) 783 WP_000057212.1 ParA family protein -
  ABUS03_RS09005 - 1850319..1851206 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  ABUS03_RS09010 exbB 1851256..1851891 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABUS03_RS09015 - 1851907..1852335 (+) 429 WP_000669685.1 biopolymer transporter ExbD -
  ABUS03_RS09020 msbA 1852332..1854059 (+) 1728 WP_031960445.1 lipid A export permease/ATP-binding protein MsbA -
  ABUS03_RS09025 lpxK 1854062..1855072 (+) 1011 WP_031960446.1 tetraacyldisaccharide 4'-kinase -
  ABUS03_RS09030 kdsB 1855082..1855843 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABUS03_RS09035 - 1855855..1856835 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=940397 ABUS03_RS09010 WP_000264037.1 1851256..1851891(+) (exbB) [Acinetobacter baumannii strain Hv640]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=940397 ABUS03_RS09010 WP_000264037.1 1851256..1851891(+) (exbB) [Acinetobacter baumannii strain Hv640]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393