Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V6U63_RS02190 Genome accession   NZ_CP145861
Coordinates   421901..423706 (+) Length   601 a.a.
NCBI ID   WP_272125982.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 416901..428706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS02180 (V6U63_02185) - 417693..419630 (+) 1938 WP_272125978.1 GbpC/Spa domain-containing protein -
  V6U63_RS02185 (V6U63_02190) - 420931..421890 (+) 960 WP_272125980.1 competence protein CoiA -
  V6U63_RS02190 (V6U63_02195) pepF 421901..423706 (+) 1806 WP_272125982.1 oligoendopeptidase F Regulator
  V6U63_RS02195 (V6U63_02200) - 423918..425138 (+) 1221 WP_254735012.1 OFA family MFS transporter -
  V6U63_RS02200 (V6U63_02205) - 425210..425917 (+) 708 WP_151404508.1 O-methyltransferase -
  V6U63_RS02205 (V6U63_02210) - 425979..427121 (+) 1143 WP_254735011.1 peptidyl-prolyl cis-trans isomerase -
  V6U63_RS02210 (V6U63_02215) - 427460..427945 (+) 486 WP_247915639.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69028.06 Da        Isoelectric Point: 4.5388

>NTDB_id=940367 V6U63_RS02190 WP_272125982.1 421901..423706(+) (pepF) [Streptococcus salivarius strain KSS3]
MSDNRTHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYVGHLLDSAKNLLGATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDAEKLTAFKAEEPELGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSEYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEDLVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=940367 V6U63_RS02190 WP_272125982.1 421901..423706(+) (pepF) [Streptococcus salivarius strain KSS3]
ATGTCAGACAATCGTACTCATTTAGAAGAAAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACCGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGTAGGTCATCTCTTGGATTCTGCTAAGAACT
TGCTTGGGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGTCTGTATCAAGAGTACCAAGCAAAGGCCTCAAACCTTTATTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGCTGAAAAGTTAACAGCCTTCAAAGCAGAGGAACCAGAGCTTGGACTTT
ATGACCACTATTTCGAACGTCTCTTGGCAAACAAGGACCACGTTCTTTCTCAAGAAGCGGAAGAACTCTTGGCAGCAGCC
GGTGATATTTTCAACGGTCCAACGGATACCTTTAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
CCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGTG
CTTATGAAGCGATGTACGGTACTTACGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTTAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCGGCTAACTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGAC
TTGATGAGCTTAAGATGTATGACGTCTACACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGCTCAGGTGCCTACTCAGGTGGTGCCTATGATACAAATGCTTTCATGCTTTTGAACT
GGCAAGACACTCTGGACAATCTCTTTACCTTGGTTCACGAGACCGGCCACAGCTTGCATTCAACGTTCACACGTCAGACA
CAACCATATGTTTATGGAGATTACCCAATCTTCTTGGCGGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
ACTTCTTAAAGAAGTTAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAGCATGCTATCCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCCGACTTC
ATGAATAAACTTTACGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCAGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCACGGTACTGAGGAGGATAAAGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGAATATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAATTGGAAGACTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

98.336

100

0.983