Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ABUS02_RS17600 Genome accession   NZ_CP169779
Coordinates   3607202..3607765 (-) Length   187 a.a.
NCBI ID   WP_031961383.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv635     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3602202..3612765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS02_RS17565 - 3602308..3603342 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  ABUS02_RS17570 - 3603457..3604398 (+) 942 WP_104131029.1 triacylglycerol lipase -
  ABUS02_RS17575 rplS 3604452..3604820 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS02_RS17580 trmD 3605028..3605768 (-) 741 WP_031961379.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS02_RS17585 rimM 3605814..3606362 (-) 549 WP_031961380.1 ribosome maturation factor RimM -
  ABUS02_RS17590 rpsP 3606382..3606633 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS02_RS17595 pilE 3606780..3607202 (-) 423 WP_031961381.1 type IV pilin protein Machinery gene
  ABUS02_RS17600 comE 3607202..3607765 (-) 564 WP_031961383.1 type IV pilin protein Machinery gene
  ABUS02_RS17605 - 3607775..3611845 (-) 4071 WP_031961384.1 PilC/PilY family type IV pilus protein -
  ABUS02_RS17610 - 3611871..3612567 (-) 697 Protein_3437 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20604.52 Da        Isoelectric Point: 8.3938

>NTDB_id=940355 ABUS02_RS17600 WP_031961383.1 3607202..3607765(-) (comE) [Acinetobacter baumannii strain Hv635]
MLKQRAFTLLELMVTVVIIAILAAIAYPSYTRYIEKKDLAVAKQEAQRIATELERFKAKNFSYKGFDATYLYNAGTVTPY
NATTGTLLLPLDATSTTAKYTLTLLDGTQHLPLSILKGSDGNETADSAKVQGLNWVIIVERAKNNSGEPKQANNYDLLIN
SDGFRCMTKVKNVVSGYTDCGSNSETW

Nucleotide


Download         Length: 564 bp        

>NTDB_id=940355 ABUS02_RS17600 WP_031961383.1 3607202..3607765(-) (comE) [Acinetobacter baumannii strain Hv635]
ATGTTGAAACAACGAGCTTTTACCCTGCTTGAGTTGATGGTCACTGTGGTGATTATTGCGATTTTAGCTGCTATCGCGTA
TCCAAGTTATACGCGATACATTGAAAAAAAAGATCTAGCCGTAGCAAAACAAGAGGCTCAGCGTATTGCTACGGAGTTAG
AGCGTTTTAAAGCTAAAAACTTTAGCTATAAAGGTTTTGATGCGACTTACCTTTATAATGCTGGAACGGTTACTCCTTAT
AATGCAACCACTGGTACTTTATTGTTGCCACTAGATGCTACGTCAACAACTGCCAAGTACACATTGACTCTATTAGATGG
CACTCAACATTTACCTTTATCTATTTTAAAGGGCTCTGATGGTAACGAGACAGCAGATTCTGCGAAAGTCCAAGGTTTAA
ACTGGGTTATTATTGTTGAAAGGGCTAAGAATAATAGTGGTGAACCTAAGCAAGCTAATAACTATGATTTACTTATAAAC
AGCGATGGTTTTCGTTGTATGACAAAAGTTAAAAATGTAGTCAGTGGATATACTGACTGTGGTAGCAATAGTGAGACATG
GTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

43.85

100

0.439